Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0845 ATGGCAGATACTGGTGAAAATCAACAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAGCCCACGAAGAACAAAAACATCAGAAAGCGGACTGTTGATGAAGATGAAGAGGACAACTCTACAACTGAGACTTCGATGCTGTTAAATCAGAAAAAAGCCCACAAGACTGAAAGCAAGCTCTATTTTTCTTCTGGACCTTCTAAAACTTCCTTGACTAATGAGTCAAATGTAGAATCCTATAAACCAATTTTCCAGTTTGAGTCTTCAAAAGAAATTCAAGTTCATCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAAACTGATTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAAGAGGCCTTGAAAGGTAAAGGAAAGAGTTCTGCGGGTGAAAAGTTGTATAAAGGGGTCAATGCCTATGTGGACTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGTGAAAAGGCTGGTGGATCACATGGGCCGCTTAGAGCCTCTGCTCATATTAGAACTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACAGGTTACTGTGGTTATGGAGATTCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGACTGGGAGGAAGTAGAGAAAGCCAGGAAGAGAAAGTTAGCCATGCGATCTGATGATGGGGATGAGGATGCTGCAGAACAGAGCGATGAAGATGATGAAGATGCCTTGCCATTCGCTTGTTTTATTTGTCGTGAACCATTTGCGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTGAAGCACCATGCAAAGAATAAGAAATGTTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATAAAGAAAAGGATGGCTCAGAGTAAATAA 969 42.11 MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLYFSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSDDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKRMAQSK 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19390483 19395378 - Sed0004785.2 Sed11g0845 729491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0845 322 SMART ring_2 263 300 IPR001841 -
Sed11g0845 322 MobiDBLite consensus disorder prediction 59 75 - -
Sed11g0845 322 PANTHER ZINC FINGER PROTEIN 183 12 321 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Sed11g0845 322 FunFam Zinc finger CCCH domain-containing protein 1 183 217 - -
Sed11g0845 322 Pfam Zinc finger, C3HC4 type (RING finger) 262 304 - -
Sed11g0845 322 MobiDBLite consensus disorder prediction 1 75 - -
Sed11g0845 322 FunFam RING finger protein 113A 261 320 - -
Sed11g0845 322 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872(InterPro)
Sed11g0845 322 SMART c3hfinal6 185 212 IPR000571 GO:0046872(InterPro)
Sed11g0845 322 MobiDBLite consensus disorder prediction 1 19 - -
Sed11g0845 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 320 IPR013083 -
Sed11g0845 322 MobiDBLite consensus disorder prediction 234 253 - -
Sed11g0845 322 SUPERFAMILY RING/U-box 262 306 - -
Sed11g0845 322 ProSiteProfiles Zinc finger RING-type profile. 263 301 IPR001841 -
Sed11g0845 322 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872(InterPro)
Sed11g0845 322 CDD RING-HC_RNF113A_B 256 309 - -
Sed11g0845 322 Gene3D - 181 217 - -
Sed11g0845 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872(InterPro)
Sed11g0845 322 ProSitePatterns Zinc finger RING-type signature. 278 287 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0845 Sed-Chr11:19390483 Sed11g0847 Sed-Chr11:19390483 2.00E-163 dispersed
Sed11g0844 Sed-Chr11:19390483 Sed11g0845 Sed-Chr11:19390483 2.10E-184 tandem
Sed11g0845 Sed-Chr11:19390483 Sed11g0846 Sed-Chr11:19390483 2.00E-163 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39920 PF13920 zf-C3HC4_3 3.70E-09 CL0229 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0845 K13127 - csv:101221334 594.349