Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0846 | ATGGCAGATACTGGTGAAAATCAACAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAGCCCACGAAGAACAAAAACATCAGAAAGCGGACTGTTGATGAAGATGAAGAGGACAACTCTACAACTGAGACTTCGATGCTGTTAAATCAGAAAAAAGCCCACAAGACTGAAAGCAAGCTCTATTTTTCTTCTGGACCTTCTAAAACTTCCTTGACTAATGAGTCAAATGTAGAATCCTATAAACCAATTTTCCAGTTTGAGTCTTCAAAAGAAATTCAAGTTCATCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAAACTGATTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAAGAGGCCTTGAAAGGTAAAGGAAAGAGTTCTGCGGGTGAAAAGTTGTATAAAGGGGTCAATGCCTATGTGGACTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGTGAAAAGGCTGGTGGATCACATGGGCCGCTTAGAGCCTCTGCTCATATTAGAACTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACAGGTTACTGTGGTTATGGAGATTCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGACTGGGAGGAAGTAGAGAAAGCCAGGAAGAGAAAGTTAGCCATGCGATCTGATGATGGGGATGAGGATGCTGCAGAACAGAGCGATGAAGATGATGAAGATGCCTTGCCATTCGCTTGTTTTATTTGTCGTGAACCATTTGCGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTGAAGGTAATAGCTCTTTTCTGGTCTACTTTATCTTGGAATTGGAAATATGGTGATCGTGAAGTGCTTTTTTGTCGGGGAGGTTGA | 948 | 42.3 | MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLYFSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSDDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKVIALFWSTLSWNWKYGDREVLFCRGG | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19390483 | 19395378 | - | Sed0004785.3 | Sed11g0846 | 729492 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0846 | 315 | MobiDBLite | consensus disorder prediction | 59 | 75 | - | - | |
Sed11g0846 | 315 | Gene3D | - | 181 | 216 | - | - | |
Sed11g0846 | 315 | CDD | RING-HC_RNF113A_B | 256 | 290 | - | - | |
Sed11g0846 | 315 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Sed11g0846 | 315 | Pfam | RING-type zinc-finger | 263 | 298 | IPR027370 | - | |
Sed11g0846 | 315 | ProSiteProfiles | Zinc finger C3H1-type profile. | 185 | 213 | IPR000571 | GO:0046872(InterPro) | |
Sed11g0846 | 315 | SMART | c3hfinal6 | 185 | 212 | IPR000571 | GO:0046872(InterPro) | |
Sed11g0846 | 315 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Sed11g0846 | 315 | PANTHER | ZINC FINGER PROTEIN 183 | 12 | 290 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) | |
Sed11g0846 | 315 | FunFam | Zinc finger CCCH domain-containing protein 1 | 183 | 217 | - | - | |
Sed11g0846 | 315 | SUPERFAMILY | RING/U-box | 261 | 293 | - | - | |
Sed11g0846 | 315 | ProSiteProfiles | Zinc finger RING-type profile. | 263 | 286 | IPR001841 | - | |
Sed11g0846 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 217 | 313 | IPR013083 | - | |
Sed11g0846 | 315 | SMART | ring_2 | 263 | 312 | IPR001841 | - | |
Sed11g0846 | 315 | SUPERFAMILY | CCCH zinc finger | 184 | 216 | IPR036855 | GO:0046872(InterPro) | |
Sed11g0846 | 315 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 186 | 211 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0499 | Sed-Chr4:3659221 | Sed11g0846 | Sed-Chr11:19390483 | 3.40E-133 | dispersed | |
Sed11g0844 | Sed-Chr11:19390483 | Sed11g0846 | Sed-Chr11:19390483 | 2.00E-163 | dispersed | |
Sed11g0845 | Sed-Chr11:19390483 | Sed11g0846 | Sed-Chr11:19390483 | 2.00E-163 | tandem | |
Sed11g0846 | Sed-Chr11:19390483 | Sed11g0847 | Sed-Chr11:19390483 | 9.40E-182 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39921 | PF13445 | zf-RING_UBOX | 1.00E-06 | CL0229 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0846 | K13127 | - | csv:101221334 | 525.398 |