Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0846 ATGGCAGATACTGGTGAAAATCAACAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAGCCCACGAAGAACAAAAACATCAGAAAGCGGACTGTTGATGAAGATGAAGAGGACAACTCTACAACTGAGACTTCGATGCTGTTAAATCAGAAAAAAGCCCACAAGACTGAAAGCAAGCTCTATTTTTCTTCTGGACCTTCTAAAACTTCCTTGACTAATGAGTCAAATGTAGAATCCTATAAACCAATTTTCCAGTTTGAGTCTTCAAAAGAAATTCAAGTTCATCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAAACTGATTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAAGAGGCCTTGAAAGGTAAAGGAAAGAGTTCTGCGGGTGAAAAGTTGTATAAAGGGGTCAATGCCTATGTGGACTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGTGAAAAGGCTGGTGGATCACATGGGCCGCTTAGAGCCTCTGCTCATATTAGAACTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACAGGTTACTGTGGTTATGGAGATTCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGACTGGGAGGAAGTAGAGAAAGCCAGGAAGAGAAAGTTAGCCATGCGATCTGATGATGGGGATGAGGATGCTGCAGAACAGAGCGATGAAGATGATGAAGATGCCTTGCCATTCGCTTGTTTTATTTGTCGTGAACCATTTGCGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTGAAGGTAATAGCTCTTTTCTGGTCTACTTTATCTTGGAATTGGAAATATGGTGATCGTGAAGTGCTTTTTTGTCGGGGAGGTTGA 948 42.3 MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLYFSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSDDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKVIALFWSTLSWNWKYGDREVLFCRGG 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19390483 19395378 - Sed0004785.3 Sed11g0846 729492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0846 315 MobiDBLite consensus disorder prediction 59 75 - -
Sed11g0846 315 Gene3D - 181 216 - -
Sed11g0846 315 CDD RING-HC_RNF113A_B 256 290 - -
Sed11g0846 315 MobiDBLite consensus disorder prediction 1 75 - -
Sed11g0846 315 Pfam RING-type zinc-finger 263 298 IPR027370 -
Sed11g0846 315 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872(InterPro)
Sed11g0846 315 SMART c3hfinal6 185 212 IPR000571 GO:0046872(InterPro)
Sed11g0846 315 MobiDBLite consensus disorder prediction 1 19 - -
Sed11g0846 315 PANTHER ZINC FINGER PROTEIN 183 12 290 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Sed11g0846 315 FunFam Zinc finger CCCH domain-containing protein 1 183 217 - -
Sed11g0846 315 SUPERFAMILY RING/U-box 261 293 - -
Sed11g0846 315 ProSiteProfiles Zinc finger RING-type profile. 263 286 IPR001841 -
Sed11g0846 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 313 IPR013083 -
Sed11g0846 315 SMART ring_2 263 312 IPR001841 -
Sed11g0846 315 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872(InterPro)
Sed11g0846 315 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0499 Sed-Chr4:3659221 Sed11g0846 Sed-Chr11:19390483 3.40E-133 dispersed
Sed11g0844 Sed-Chr11:19390483 Sed11g0846 Sed-Chr11:19390483 2.00E-163 dispersed
Sed11g0845 Sed-Chr11:19390483 Sed11g0846 Sed-Chr11:19390483 2.00E-163 tandem
Sed11g0846 Sed-Chr11:19390483 Sed11g0847 Sed-Chr11:19390483 9.40E-182 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39921 PF13445 zf-RING_UBOX 1.00E-06 CL0229 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0846 K13127 - csv:101221334 525.398