Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0858 ATGTCAGAAAGTATAGGCAGCCAGTCCACAAACACAGGAGGATCAAGACACAGCTCCAGAATTCTTACTCAAACCTCCATAGATGCAAAGCTCCACTCCAACTTCGAACAATCCGGTTCCACCTTCGACTACTCGGCTTCGATCCATCTCACTAACAACCCACCATTCACAACCACAACCACTGCATACCTCCACAACATCCAAAAATCCAACCTCATCCAGCCCTTCGGCTGCCTTTTAGCCCTTCACCCAACCACCCTCAAGCTTATCGCCTTCACCCAAAACGCCCCTGAATTCCTCGCCACCGTCTCCCACACCGTCCCCACCATCTCCGACCACCCCCTCCTCGCCTTCGGTACCGACCTCCGCACCATCTTCACCGCCCCTACTACCACTGCGCTCCTCAAGGCTCTAGCCTTCCCCGATGTCACCCTCCTCAACCCCATTCTCGTCCACTCCAAAACCTCAGGGAAGCCTTTCTACGCCATTCTCCACCGCGTCACTGGCAGCATCATCATCGACTTCGAGCCTGTCAAGCCCGACGAAGTCCCCGTCACGGCAGCTGGGGCTCTACAGTCCTATAAACTAGCAGCCAAGGCCATCACTCGACTTCAAGCTCTCCCCAGTGGGAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAGGTTTTCGAGTTGACGGGCTATGATAGAGTTATGGCTTATAAATTCCACGACGATGATCACGGGGAGGTTTTCTCTGAGGTTACTAAGCCTGGGCTTGAGCCTTATCTGGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCAAGGTTTCTGTTCATGAAGAATAAGGTTAGAATGATTGTGGACTGCAAAGCCAAGAATGTCAAGGTCATTCAAGATCCAAGCCTTGACTTTGATTTGACATTATGTGGGTCAACTTTGAGAGCTCCTCATAGTTGCCATTTGCAGTATATGGAGAATATGAACTCTATAGCTTCTTTGGTTATGGCCATTGTGGTGAATGAGGAGAATGAAGAGGAATATGAGCATAAAAATGAAGTTTCTAATTTGCAAAAAAACAAGAGGAAACGATTGTGGGGTTTGGTTGTTTGTCATAATACAACTCCTAGATTTGTTCCTTTTCCTCTTAGGTATGCCTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAAGAATTAGAATTGGAGAGTCAGATTTTGGAGAAGAACATCTTGAGGACTCAAACGCTTTTGTGCGACATGCTGATGCGTGATGCTCCTTTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGGGCTGCATTGTTGTACAAGAATAAGGTTTGGAGGTTGGGGATAACTCCTACTGATTTTCAGCTTCATGACATCGCTTCATGGATTTTGGAGTATCATGTGGACTCTACTGGTTTGAGTACTGATAGCTTGTATGATGCAGAGTACCCTGGCGCGCTTGCACTAGGGGACGCAGTGTGCGGGATGGCAGCCGTGAGGATAGCTTCGGATGACATGATTTTCTGGTTCCGATCACACACTGCATCGGAGATTCGGTGGGGCGGGGCCAAGCATGAGGCTGGTGAGAAGGATGACGGGAGGAAAATGCATCCTAGGTCATCGTTTAAGGCTTTTCTTGAAGTGGTGAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCGTTGCAACTTATCCTACGAAACACTTATAAAGATGTTGATAGTACGAGTGAGATGAATAGAAAATCAATACAATCAACACTGAGTGATCTCAAAATTGATGGGAGGCAAGAATTGGAATCAGTGACAAGTGAGATGGTCAGGTTGATTGAAACAGCTACAGTTCCAATTTTGGCTGTTGATGTGGATGGGCTTGTTAATGGGTGGAACTCCAAACTTGCTGAGTTGACTGGGCTCTCTGTTGGCAAAGCTATTGGCAAGAATTTGGTAACCTTGGTGGAAGATTCTTCTGTAGAAACTGTAAACAAGATGTTGTTTTTGGCATTGCAAGGGCAAGAGGAAAAAAACGTGGAATTCGAAATAAGAAGACAGGGCTCAGACTCCAATATCAGACTAATAGTAAATGCATGTGCAAGCAGAGATGTGAGTGAAAACGTAGTGGGAGTGTGCTTGGTTGCACAAGACATAACCCAGGAAAAGAAAGTGATGGACAAGTTCACAAAGCTGCAAGGCGATTACAAAGCCATAGTACAGAACCCCAACCCTCTAATCCCTCCGATATTCGGGGTCGACGAGTTCGGGTGGTGCAGCGAATGGAACTTAGCAATGGAAAACGTCAGCGGATGGTCACGCGAAGAAGTCCTGAACAAGATGCTGTTGGGCGAAGTGTTTGGCTCCTGCTGCAATCTAAGGAGCCGAGAAGCCTTCGTGAACCTCGGAATTCTGTTGAACAATGCCATGAGCGGCCAAGACCCCGAAACCATTTCGTTTGGGTTCTTTGCTAGAAATGGGGTGTTTGTTGAATGTCTTCTCTGTGTGAACAAGATATTGGATTCTGATGGTGAAGTTATTGGGCTGTTTTGTTTCTTGCAACTTGCAAGCCAAGAGCTGCAACAGGCTTTGAATGTTCAGAAGCTGTGTGAGAGAACTGCTTTGAAGAGATTGAAGGCTTTGGGATATGTGAAGAGGCAGATTCAAAGCCCCCTTTGTGGGATTGTTTTTTCCAGGAAAATGTTGGAGAGAACTGAGTTGGGAGATGAACAGAAGCAGCTTTTGCTTAATGGTGCCAATTGTCAAGCCCAAATCTCTAAGGTTCTTCACGAGTCACATGATCTTGGTAACATCATTCAGGGTTTGATTGATCTAGAAATGGTTGAGTTTTCATTATATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGCATCCAAATAGTGAATGAGGTGGCAGAAGAGATCATGTCTGAGACCTTTTATGGAGACAATTTGAGAGTTCAACAAGTCATGGCTGATTTCTTGTTGACATCAGTTACTTATGCTCCAACAGGAGGCCAACTTATGTTTACAACAATTTTGACCAAAGATCAATTAGCAAACTCACTACATCTTGTGCATGTAGAGTTCAGCATAACATATGTAGGTGGAGGCATACCAGAAGCATTGTTGAATGAGATGTTTGGGAATGATGAGAATGCATCTGAAGAAGGTTTCAGCCTTCTCATAAGTAGAAAGCTGGTGAAACTCATGAATGGAGATGTGAGATATGTGAGGGAAGCAGCCAAGTCAACCTTCATCATAACTCTTGATCTTGCTACTCCTCATAAGTTAATAACCTAA 3354 45.32 MSESIGSQSTNTGGSRHSSRILTQTSIDAKLHSNFEQSGSTFDYSASIHLTNNPPFTTTTTAYLHNIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEFLATVSHTVPTISDHPLLAFGTDLRTIFTAPTTTALLKALAFPDVTLLNPILVHSKTSGKPFYAILHRVTGSIIIDFEPVKPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKNVKVIQDPSLDFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAIVVNEENEEEYEHKNEVSNLQKNKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKVWRLGITPTDFQLHDIASWILEYHVDSTGLSTDSLYDAEYPGALALGDAVCGMAAVRIASDDMIFWFRSHTASEIRWGGAKHEAGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDVDSTSEMNRKSIQSTLSDLKIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKLAELTGLSVGKAIGKNLVTLVEDSSVETVNKMLFLALQGQEEKNVEFEIRRQGSDSNIRLIVNACASRDVSENVVGVCLVAQDITQEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCSEWNLAMENVSGWSREEVLNKMLLGEVFGSCCNLRSREAFVNLGILLNNAMSGQDPETISFGFFARNGVFVECLLCVNKILDSDGEVIGLFCFLQLASQELQQALNVQKLCERTALKRLKALGYVKRQIQSPLCGIVFSRKMLERTELGDEQKQLLLNGANCQAQISKVLHESHDLGNIIQGLIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIVNEVAEEIMSETFYGDNLRVQQVMADFLLTSVTYAPTGGQLMFTTILTKDQLANSLHLVHVEFSITYVGGGIPEALLNEMFGNDENASEEGFSLLISRKLVKLMNGDVRYVREAAKSTFIITLDLATPHKLIT 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20293608 20306470 - Sed0017886.1 Sed11g0858 729504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0858 1117 CDD PAS 756 864 IPR000014 -
Sed11g0858 1117 SMART HKATPase_4 999 1111 IPR003594 -
Sed11g0858 1117 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 999 1110 IPR003594 -
Sed11g0858 1117 FunFam Phytochrome 403 537 - -
Sed11g0858 1117 SMART gaf_1 211 408 IPR003018 GO:0005515(InterPro)
Sed11g0858 1117 SMART pas_2 744 814 IPR000014 -
Sed11g0858 1117 SMART pas_2 617 683 IPR000014 -
Sed11g0858 1117 CDD PAS 626 729 IPR000014 -
Sed11g0858 1117 SMART pac_2 689 732 IPR001610 -
Sed11g0858 1117 SMART pac_2 827 869 IPR001610 -
Sed11g0858 1117 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 211 388 IPR016132 -
Sed11g0858 1117 Gene3D PAS domain 758 871 - -
Sed11g0858 1117 ProSiteProfiles Histidine kinase domain profile. 893 1111 IPR005467 -
Sed11g0858 1117 ProSiteProfiles PAS repeat profile. 745 797 IPR000014 -
Sed11g0858 1117 Pfam Phytochrome region 411 583 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 945 1109 IPR036890 -
Sed11g0858 1117 Pfam PAS fold 62 178 IPR013654 GO:0006355(InterPro)
Sed11g0858 1117 SUPERFAMILY GAF domain-like 406 583 - -
Sed11g0858 1117 Pfam GAF domain 213 397 IPR003018 GO:0005515(InterPro)
Sed11g0858 1117 Gene3D - 950 1113 IPR036890 -
Sed11g0858 1117 Gene3D PAS domain 66 314 - -
Sed11g0858 1117 Gene3D - 192 559 IPR029016 -
Sed11g0858 1117 ProSiteProfiles PAC domain profile. 688 741 IPR000700 -
Sed11g0858 1117 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 126 148 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 226 245 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 311 332 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 Pfam PAS fold 618 729 IPR013767 GO:0006355(InterPro)
Sed11g0858 1117 Pfam PAS fold 745 864 IPR013767 GO:0006355(InterPro)
Sed11g0858 1117 Coils Coil 336 356 - -
Sed11g0858 1117 ProSitePatterns Phytochrome chromophore attachment site signature. 311 320 IPR013516 -
Sed11g0858 1117 PANTHER OS08G0260000 PROTEIN 6 695 - -
Sed11g0858 1117 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 861 IPR035965 -
Sed11g0858 1117 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
Sed11g0858 1117 Gene3D - 403 576 IPR043150 -
Sed11g0858 1117 NCBIfam PAS domain S-box protein 622 735 IPR000014 -
Sed11g0858 1117 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 181 IPR035965 -
Sed11g0858 1117 Gene3D PAS domain 611 744 - -
Sed11g0858 1117 Coils Coil 395 415 - -
Sed11g0858 1117 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 725 IPR035965 -
Sed11g0858 1117 PIRSF Phytochrome_conventional 1 1117 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Sed11g0858 1117 SUPERFAMILY GAF domain-like 191 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0858 K12120 - - csv:101219585 1822.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0823 Sed-Chr11:17778534 Sed11g0858 Sed-Chr11:20293608 0.00E+00 dispersed
Sed11g0824 Sed-Chr11:17779233 Sed11g0858 Sed-Chr11:20293608 0.00E+00 dispersed
Sed11g0858 Sed-Chr11:20293608 Sed12g0771 Sed-Chr12:4689706 0.00E+00 dispersed
Sed11g0858 Sed-Chr11:20293608 Sed02g1136 Sed-Chr2:48568134 0.00E+00 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56