Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0858 ATGTCAGAAAGTATAGGCAGCCAGTCCACAAACACAGGAGGATCAAGACACAGCTCCAGAATTCTTACTCAAACCTCCATAGATGCAAAGCTCCACTCCAACTTCGAACAATCCGGTTCCACCTTCGACTACTCGGCTTCGATCCATCTCACTAACAACCCACCATTCACAACCACAACCACTGCATACCTCCACAACATCCAAAAATCCAACCTCATCCAGCCCTTCGGCTGCCTTTTAGCCCTTCACCCAACCACCCTCAAGCTTATCGCCTTCACCCAAAACGCCCCTGAATTCCTCGCCACCGTCTCCCACACCGTCCCCACCATCTCCGACCACCCCCTCCTCGCCTTCGGTACCGACCTCCGCACCATCTTCACCGCCCCTACTACCACTGCGCTCCTCAAGGCTCTAGCCTTCCCCGATGTCACCCTCCTCAACCCCATTCTCGTCCACTCCAAAACCTCAGGGAAGCCTTTCTACGCCATTCTCCACCGCGTCACTGGCAGCATCATCATCGACTTCGAGCCTGTCAAGCCCGACGAAGTCCCCGTCACGGCAGCTGGGGCTCTACAGTCCTATAAACTAGCAGCCAAGGCCATCACTCGACTTCAAGCTCTCCCCAGTGGGAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAGGTTTTCGAGTTGACGGGCTATGATAGAGTTATGGCTTATAAATTCCACGACGATGATCACGGGGAGGTTTTCTCTGAGGTTACTAAGCCTGGGCTTGAGCCTTATCTGGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCAAGGTTTCTGTTCATGAAGAATAAGGTTAGAATGATTGTGGACTGCAAAGCCAAGAATGTCAAGGTCATTCAAGATCCAAGCCTTGACTTTGATTTGACATTATGTGGGTCAACTTTGAGAGCTCCTCATAGTTGCCATTTGCAGTATATGGAGAATATGAACTCTATAGCTTCTTTGGTTATGGCCATTGTGGTGAATGAGGAGAATGAAGAGGAATATGAGCATAAAAATGAAGTTTCTAATTTGCAAAAAAACAAGAGGAAACGATTGTGGGGTTTGGTTGTTTGTCATAATACAACTCCTAGATTTGTTCCTTTTCCTCTTAGGTATGCCTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAAGAATTAGAATTGGAGAGTCAGATTTTGGAGAAGAACATCTTGAGGACTCAAACGCTTTTGTGCGACATGCTGATGCGTGATGCTCCTTTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGGGCTGCATTGTTGTACAAGAATAAGGTTTGGAGGTTGGGGATAACTCCTACTGATTTTCAGCTTCATGACATCGCTTCATGGATTTTGGAGTATCATGTGGACTCTACTGGTTTGAGTACTGATAGCTTGTATGATGCAGAGTACCCTGGCGCGCTTGCACTAGGGGACGCAGTGTGCGGGATGGCAGCCGTGAGGATAGCTTCGGATGACATGATTTTCTGGTTCCGATCACACACTGCATCGGAGATTCGGTGGGGCGGGGCCAAGCATGAGGCTGGTGAGAAGGATGACGGGAGGAAAATGCATCCTAGGTCATCGTTTAAGGCTTTTCTTGAAGTGGTGAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCGTTGCAACTTATCCTACGAAACACTTATAAAGATGTTGATAGTACGAGTGAGATGAATAGAAAATCAATACAATCAACACTGAGTGATCTCAAAATTGATGGGAGGCAAGAATTGGAATCAGTGACAAGTGAGATGGTCAGGTTGATTGAAACAGCTACAGTTCCAATTTTGGCTGTTGATGTGGATGGGCTTGTTAATGGGTGGAACTCCAAACTTGCTGAGTTGACTGGGCTCTCTGTTGGCAAAGCTATTGGCAAGAATTTGGTAACCTTGGTGGAAGATTCTTCTGTAGAAACTGTAAACAAGATGTTGTTTTTGGCATTGCAAGGGCAAGAGGAAAAAAACGTGGAATTCGAAATAAGAAGACAGGGCTCAGACTCCAATATCAGACTAATAGTAAATGCATGTGCAAGCAGAGATGTGAGTGAAAACGTAGTGGGAGTGTGCTTGGTTGCACAAGACATAACCCAGGAAAAGAAAGTGATGGACAAGTTCACAAAGCTGCAAGGCGATTACAAAGCCATAGTACAGAACCCCAACCCTCTAATCCCTCCGATATTCGGGGTCGACGAGTTCGGGTGGTGCAGCGAATGGAACTTAGCAATGGAAAACGTCAGCGGATGGTCACGCGAAGAAGTCCTGAACAAGATGCTGTTGGGCGAAGTGTTTGGCTCCTGCTGCAATCTAAGGAGCCGAGAAGCCTTCGTGAACCTCGGAATTCTGTTGAACAATGCCATGAGCGGCCAAGACCCCGAAACCATTTCGTTTGGGTTCTTTGCTAGAAATGGGGTGTTTGTTGAATGTCTTCTCTGTGTGAACAAGATATTGGATTCTGATGGTGAAGTTATTGGGCTGTTTTGTTTCTTGCAACTTGCAAGCCAAGAGCTGCAACAGGCTTTGAATGTTCAGAAGCTGTGTGAGAGAACTGCTTTGAAGAGATTGAAGGCTTTGGGATATGTGAAGAGGCAGATTCAAAGCCCCCTTTGTGGGATTGTTTTTTCCAGGAAAATGTTGGAGAGAACTGAGTTGGGAGATGAACAGAAGCAGCTTTTGCTTAATGGTGCCAATTGTCAAGCCCAAATCTCTAAGGTTCTTCACGAGTCACATGATCTTGGTAACATCATTCAGGGTTTGATTGATCTAGAAATGGTTGAGTTTTCATTATATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGCATCCAAATAGTGAATGAGGTGGCAGAAGAGATCATGTCTGAGACCTTTTATGGAGACAATTTGAGAGTTCAACAAGTCATGGCTGATTTCTTGTTGACATCAGTTACTTATGCTCCAACAGGAGGCCAACTTATGTTTACAACAATTTTGACCAAAGATCAATTAGCAAACTCACTACATCTTGTGCATGTAGAGTTCAGCATAACATATGTAGGTGGAGGCATACCAGAAGCATTGTTGAATGAGATGTTTGGGAATGATGAGAATGCATCTGAAGAAGGTTTCAGCCTTCTCATAAGTAGAAAGCTGGTGAAACTCATGAATGGAGATGTGAGATATGTGAGGGAAGCAGCCAAGTCAACCTTCATCATAACTCTTGATCTTGCTACTCCTCATAAGTTAATAACCTAA 3354 45.32 MSESIGSQSTNTGGSRHSSRILTQTSIDAKLHSNFEQSGSTFDYSASIHLTNNPPFTTTTTAYLHNIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEFLATVSHTVPTISDHPLLAFGTDLRTIFTAPTTTALLKALAFPDVTLLNPILVHSKTSGKPFYAILHRVTGSIIIDFEPVKPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKNVKVIQDPSLDFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAIVVNEENEEEYEHKNEVSNLQKNKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKVWRLGITPTDFQLHDIASWILEYHVDSTGLSTDSLYDAEYPGALALGDAVCGMAAVRIASDDMIFWFRSHTASEIRWGGAKHEAGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDVDSTSEMNRKSIQSTLSDLKIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKLAELTGLSVGKAIGKNLVTLVEDSSVETVNKMLFLALQGQEEKNVEFEIRRQGSDSNIRLIVNACASRDVSENVVGVCLVAQDITQEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCSEWNLAMENVSGWSREEVLNKMLLGEVFGSCCNLRSREAFVNLGILLNNAMSGQDPETISFGFFARNGVFVECLLCVNKILDSDGEVIGLFCFLQLASQELQQALNVQKLCERTALKRLKALGYVKRQIQSPLCGIVFSRKMLERTELGDEQKQLLLNGANCQAQISKVLHESHDLGNIIQGLIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIVNEVAEEIMSETFYGDNLRVQQVMADFLLTSVTYAPTGGQLMFTTILTKDQLANSLHLVHVEFSITYVGGGIPEALLNEMFGNDENASEEGFSLLISRKLVKLMNGDVRYVREAAKSTFIITLDLATPHKLIT 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20293608 20306470 - Sed0017886.1 Sed11g0858 729504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0858 1117 CDD PAS 756 864 IPR000014 -
Sed11g0858 1117 SMART HKATPase_4 999 1111 IPR003594 -
Sed11g0858 1117 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 999 1110 IPR003594 -
Sed11g0858 1117 FunFam Phytochrome 403 537 - -
Sed11g0858 1117 SMART gaf_1 211 408 IPR003018 GO:0005515(InterPro)
Sed11g0858 1117 SMART pas_2 744 814 IPR000014 -
Sed11g0858 1117 SMART pas_2 617 683 IPR000014 -
Sed11g0858 1117 CDD PAS 626 729 IPR000014 -
Sed11g0858 1117 SMART pac_2 689 732 IPR001610 -
Sed11g0858 1117 SMART pac_2 827 869 IPR001610 -
Sed11g0858 1117 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 211 388 IPR016132 -
Sed11g0858 1117 Gene3D PAS domain 758 871 - -
Sed11g0858 1117 ProSiteProfiles Histidine kinase domain profile. 893 1111 IPR005467 -
Sed11g0858 1117 ProSiteProfiles PAS repeat profile. 745 797 IPR000014 -
Sed11g0858 1117 Pfam Phytochrome region 411 583 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 945 1109 IPR036890 -
Sed11g0858 1117 Pfam PAS fold 62 178 IPR013654 GO:0006355(InterPro)
Sed11g0858 1117 SUPERFAMILY GAF domain-like 406 583 - -
Sed11g0858 1117 Pfam GAF domain 213 397 IPR003018 GO:0005515(InterPro)
Sed11g0858 1117 Gene3D - 950 1113 IPR036890 -
Sed11g0858 1117 Gene3D PAS domain 66 314 - -
Sed11g0858 1117 Gene3D - 192 559 IPR029016 -
Sed11g0858 1117 ProSiteProfiles PAC domain profile. 688 741 IPR000700 -
Sed11g0858 1117 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 126 148 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 226 245 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 311 332 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed11g0858 1117 Pfam PAS fold 618 729 IPR013767 GO:0006355(InterPro)
Sed11g0858 1117 Pfam PAS fold 745 864 IPR013767 GO:0006355(InterPro)
Sed11g0858 1117 Coils Coil 336 356 - -
Sed11g0858 1117 ProSitePatterns Phytochrome chromophore attachment site signature. 311 320 IPR013516 -
Sed11g0858 1117 PANTHER OS08G0260000 PROTEIN 6 695 - -
Sed11g0858 1117 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 861 IPR035965 -
Sed11g0858 1117 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
Sed11g0858 1117 Gene3D - 403 576 IPR043150 -
Sed11g0858 1117 NCBIfam PAS domain S-box protein 622 735 IPR000014 -
Sed11g0858 1117 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 181 IPR035965 -
Sed11g0858 1117 Gene3D PAS domain 611 744 - -
Sed11g0858 1117 Coils Coil 395 415 - -
Sed11g0858 1117 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 725 IPR035965 -
Sed11g0858 1117 PIRSF Phytochrome_conventional 1 1117 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Sed11g0858 1117 SUPERFAMILY GAF domain-like 191 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0823 Sed-Chr11:17778534 Sed11g0858 Sed-Chr11:20293608 0.00E+00 dispersed
Sed11g0824 Sed-Chr11:17779233 Sed11g0858 Sed-Chr11:20293608 0.00E+00 dispersed
Sed11g0858 Sed-Chr11:20293608 Sed12g0771 Sed-Chr12:4689706 0.00E+00 dispersed
Sed11g0858 Sed-Chr11:20293608 Sed02g1136 Sed-Chr2:48568134 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0858 K12120 - csv:101219585 1822.36