Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0859 ATGTGGCCGTGGTTTCTGAGCGTGGTCTCCTTGTACAGCGGCTACCTCCGCCGCTGTTTCTCCGCCGCGGGCCTTTCCCGGCGAGTGATCCACATCGACACCCAAACCACCATCGCCTTTTGGGGCCCAAACCCAAACAGCAAATCCACACCAAAACCCTCCGTCCTCCTCCTCCACGGCTTCGGCCCCGAGGCCACGTGGCAGTGGCGTCACCAAGTCCAATTCCTCGCCCATGACTTCCACGTCTACGTCCCCGACCTCGTCTTCTTCGGCGGCTCCACCACCCAATCGCCGGAGCGCACGGAGGTTTTTCAGGCGGCTTCGATCGGGCAGCTGATGGAGGGAATCGGAGTGAGCACATACTCGGTCATGGGAACGAGCTACGGTGGATTCGTGGCGTACCATATGGCCAGGATTTGGCCGGACAGGATCCACAAGGTTATCATTGCGAGTTCCGGCGTTAATATGACACGGAAAGATAACGACGCGATGCTGAAACGAGCTAATGTGGACAAGGTGGACGACTTTTTGCTACCGGTGACGGCGGAACAGTTACGGACGTTAATGAAACTTGCGGTGTTCAAAAAGGTGGGCAGAATGCCAGATTTCTTCTTGAACGACTTTATTCACAAACTGTATATGGAAAACAGAGATGAAAAGATTGAACTCCTAAAGTCGGTCACACTTGGAAGAGAAGATACGATCAACCTCTCTCCACTATCTCAGACAAAGCTAGAGGTGATGAAGGATACCTCGCACGTGCCTCAGATTGAAGACCCTGCAGAATTCAATCGTATTGTCAAGAATTTCTTAAGTGAGTCCTAA 825 52.97 MWPWFLSVVSLYSGYLRRCFSAAGLSRRVIHIDTQTTIAFWGPNPNSKSTPKPSVLLLHGFGPEATWQWRHQVQFLAHDFHVYVPDLVFFGGSTTQSPERTEVFQAASIGQLMEGIGVSTYSVMGTSYGGFVAYHMARIWPDRIHKVIIASSGVNMTRKDNDAMLKRANVDKVDDFLLPVTAEQLRTLMKLAVFKKVGRMPDFFLNDFIHKLYMENRDEKIELLKSVTLGREDTINLSPLSQTKLEVMKDTSHVPQIEDPAEFNRIVKNFLSES 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20373536 20399909 + Sed0017944.1 Sed11g0859 729505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0859 274 Pfam alpha/beta hydrolase fold 53 164 IPR000073 -
Sed11g0859 274 Gene3D alpha/beta hydrolase 18 274 IPR029058 -
Sed11g0859 274 PANTHER SI:DKEY-122A22.2 8 273 IPR052370 -
Sed11g0859 274 SUPERFAMILY alpha/beta-Hydrolases 51 271 IPR029058 -
Sed11g0859 274 PRINTS Alpha/beta hydrolase fold signature 79 94 IPR000073 -
Sed11g0859 274 PRINTS Alpha/beta hydrolase fold signature 137 150 IPR000073 -
Sed11g0859 274 PRINTS Alpha/beta hydrolase fold signature 123 136 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0859 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1653 Sed-Chr7:13968275 Sed11g0859 Sed-Chr11:20373536 6.80E-31 dispersed
Sed11g0859 Sed-Chr11:20373536 Sed14g1027 Sed-Chr14:19872091 1.80E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g172 . . . . Bpe02g01564 . . . Cmo05g00422 . . Cma05g00410 . . Sed11g0859 . . Bhi04g01523 Tan02g1575 Cmetu03g2273 . Hepe08g1441 . Lcy13g2228 . . . . . . . . . . Cone20ag0294 Lsi04g02234 . . . Blo17g00271 Blo18g00258 Bda01g01351 . Bpe14g00283 . Bma01g00907 . . . . . . . Car05g00345 Cpe11g00350 . . . . . . . . Cla08g00981 Cam08g1430 Cec08g1008 Cco08g1131 Clacu08g1135 . Cre08g0919 . . Chy03g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009871 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 33