Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0863 | ATGGACGGTGGGGCCTCTCCGTACAATCCACGCACCGTTGAAGAGGTGTTTAGGGATTTCAAGGGCCGGAGGGCTGGTTTGATCAAGGCTCTCACTACTGATGTCGAAGACTTCTACCACCAATGTGATCCTGAGAAAGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCGGCGGAAGAGGTGCCTCCAGAACTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTGCATAGCGATGCTTGGCTGCTTTCCGTGGCATTTTATTTTGGAGCTAGGTTCAGATTTGATAAGACAGATAGGAAGCGTCTATTTACTATGATAAATGATCTTCCAACAGTATTTGAAGTGGTGACAGGGACAGCAAAAAAACAAGTCAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAGTCCAAAGCGGAGCTCGGAGCCTCAAATACAAAATACAAAGGCAGTTCAATCAAAGGATGAGGATGAGGACGAGGACGAGGAAGGTTTGGAAGAGGAAGAAGAGGATGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAAAATTATGCCTCGGATGAGTTCTGGATTTGCTGCGACATATGTGAGAAATGGTTCCATGGGAAATGTGTGAAGATCACTCCAGCGAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCTTGA | 780 | 44.74 | MDGGASPYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFRFDKTDRKRLFTMINDLPTVFEVVTGTAKKQVKDKSSVSNHSSNKSKSSPKRSSEPQIQNTKAVQSKDEDEDEDEEGLEEEEEDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20748200 | 20755050 | - | Sed0012775.1 | Sed11g0863 | 729509 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0863 | 259 | MobiDBLite | consensus disorder prediction | 182 | 202 | - | - | |
Sed11g0863 | 259 | ProSiteProfiles | Zinc finger PHD-type profile. | 203 | 255 | IPR019787 | - | |
Sed11g0863 | 259 | Pfam | Alfin | 12 | 139 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed11g0863 | 259 | PANTHER | CPG BINDING PROTEIN | 9 | 258 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Sed11g0863 | 259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 254 | IPR013083 | - | |
Sed11g0863 | 259 | MobiDBLite | consensus disorder prediction | 146 | 202 | - | - | |
Sed11g0863 | 259 | MobiDBLite | consensus disorder prediction | 146 | 177 | - | - | |
Sed11g0863 | 259 | FunFam | PHD finger alfin-like protein | 198 | 254 | - | - | |
Sed11g0863 | 259 | SMART | PHD_3 | 205 | 253 | IPR001965 | - | |
Sed11g0863 | 259 | CDD | PHD_AL_plant | 205 | 255 | IPR044104 | - | |
Sed11g0863 | 259 | ProSitePatterns | Zinc finger PHD-type signature. | 206 | 252 | IPR019786 | - | |
Sed11g0863 | 259 | Pfam | PHD-finger | 206 | 252 | IPR019787 | - | |
Sed11g0863 | 259 | SUPERFAMILY | FYVE/PHD zinc finger | 194 | 256 | IPR011011 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1808 | Sed-Chr3:11980566 | Sed11g0863 | Sed-Chr11:20748200 | 9.90E-110 | dispersed | |
Sed04g0789 | Sed-Chr4:6533395 | Sed11g0863 | Sed-Chr11:20748200 | 2.00E-100 | dispersed | |
Sed08g1790 | Sed-Chr8:32644505 | Sed11g0863 | Sed-Chr11:20748200 | 1.70E-114 | dispersed | |
Sed08g1791 | Sed-Chr8:32644505 | Sed11g0863 | Sed-Chr11:20748200 | 2.00E-89 | dispersed | |
Sed09g1666 | Sed-Chr9:40082862 | Sed11g0863 | Sed-Chr11:20748200 | 1.80E-98 | dispersed | |
Sed11g0863 | Sed-Chr11:20748200 | Sed13g1088 | Sed-Chr13:9707195 | 6.50E-88 | dispersed | |
Sed11g0863 | Sed-Chr11:20748200 | Sed08g1789 | Sed-Chr8:32644505 | 5.30E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39925 | PF12165 | Alfin | 1.60E-69 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0863 | K26274 | - | csv:101208889 | 442.965 |