Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0863 ATGGACGGTGGGGCCTCTCCGTACAATCCACGCACCGTTGAAGAGGTGTTTAGGGATTTCAAGGGCCGGAGGGCTGGTTTGATCAAGGCTCTCACTACTGATGTCGAAGACTTCTACCACCAATGTGATCCTGAGAAAGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCGGCGGAAGAGGTGCCTCCAGAACTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTGCATAGCGATGCTTGGCTGCTTTCCGTGGCATTTTATTTTGGAGCTAGGTTCAGATTTGATAAGACAGATAGGAAGCGTCTATTTACTATGATAAATGATCTTCCAACAGTATTTGAAGTGGTGACAGGGACAGCAAAAAAACAAGTCAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAGTCCAAAGCGGAGCTCGGAGCCTCAAATACAAAATACAAAGGCAGTTCAATCAAAGGATGAGGATGAGGACGAGGACGAGGAAGGTTTGGAAGAGGAAGAAGAGGATGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAAAATTATGCCTCGGATGAGTTCTGGATTTGCTGCGACATATGTGAGAAATGGTTCCATGGGAAATGTGTGAAGATCACTCCAGCGAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCTTGA 780 44.74 MDGGASPYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYHQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFRFDKTDRKRLFTMINDLPTVFEVVTGTAKKQVKDKSSVSNHSSNKSKSSPKRSSEPQIQNTKAVQSKDEDEDEDEEGLEEEEEDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20748200 20755050 - Sed0012775.1 Sed11g0863 729509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0863 259 MobiDBLite consensus disorder prediction 182 202 - -
Sed11g0863 259 ProSiteProfiles Zinc finger PHD-type profile. 203 255 IPR019787 -
Sed11g0863 259 Pfam Alfin 12 139 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed11g0863 259 PANTHER CPG BINDING PROTEIN 9 258 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed11g0863 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 254 IPR013083 -
Sed11g0863 259 MobiDBLite consensus disorder prediction 146 202 - -
Sed11g0863 259 MobiDBLite consensus disorder prediction 146 177 - -
Sed11g0863 259 FunFam PHD finger alfin-like protein 198 254 - -
Sed11g0863 259 SMART PHD_3 205 253 IPR001965 -
Sed11g0863 259 CDD PHD_AL_plant 205 255 IPR044104 -
Sed11g0863 259 ProSitePatterns Zinc finger PHD-type signature. 206 252 IPR019786 -
Sed11g0863 259 Pfam PHD-finger 206 252 IPR019787 -
Sed11g0863 259 SUPERFAMILY FYVE/PHD zinc finger 194 256 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1808 Sed-Chr3:11980566 Sed11g0863 Sed-Chr11:20748200 9.90E-110 dispersed
Sed04g0789 Sed-Chr4:6533395 Sed11g0863 Sed-Chr11:20748200 2.00E-100 dispersed
Sed08g1790 Sed-Chr8:32644505 Sed11g0863 Sed-Chr11:20748200 1.70E-114 dispersed
Sed08g1791 Sed-Chr8:32644505 Sed11g0863 Sed-Chr11:20748200 2.00E-89 dispersed
Sed09g1666 Sed-Chr9:40082862 Sed11g0863 Sed-Chr11:20748200 1.80E-98 dispersed
Sed11g0863 Sed-Chr11:20748200 Sed13g1088 Sed-Chr13:9707195 6.50E-88 dispersed
Sed11g0863 Sed-Chr11:20748200 Sed08g1789 Sed-Chr8:32644505 5.30E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39925 PF12165 Alfin 1.60E-69 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0863 K26274 - csv:101208889 442.965