Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0867 ATGCCTCCTGAAGATGGGATTCCCTTGAACACCACCGCGGTCGCCGTCGACAAGGATAAGAACAGCCAACATGCCGTCCGCTGGGCTATTGATCATCTCGTCCTAAGCAATCCGCTTATCATTCTCATCCATGTCAGGCATAAATCCAATCATCATCAGGGCGCCGGTGATTCTGAAAATGGGGATACTGATGCGCAGCAGCTGTTTGTTCCCTACCGTGGATATTGTGCGCGTAAAGGGGTTCAGTTGAGGGAGGTTGTTCTTGACGATACTGATATTCCCAAAGCAATTGTGGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTCGGAGCTTCAACAAGGAGTGCTTTAGCTAGGAAATTTAAAGGTCCTGATGTTCCAACCAGCATAACAAAAACTGCCCCAGACTTTTGTTCTGTGTATGTAATATCAAAAGGGAAGATAATATCTGCCAGAGCAGCTCTTCGGCAAGTGGCTAATACTGCCATGCCACCAAGACAACCATCAGCACTTGGAGCTCAGCCAAATGCTCAACCAGACAGCAACAATGAACAAGAAAATGGAGCCAGAGGGCAACCGACAAGGGAAGGATGGAAAAGTGCAGGTACAGAGAGAATGCTCAATGAAAGGAATGCTGCAAAACCGACAAAAGCATTGATTCGTGAGAGGCCGAAAACTTCTCCAACTAATATATCATTGGATAATATCGAGGTTCAAAATCGAGGGTCTAGGTCTTCATTTAGCAATGATTCGATCTCCGATGACAATCTGTCGACTGCGTCGATAGCTTTTGTTTCAATGGATGGGAGTTGTCAAAATTTGGATTTTAGTACTTGTTCAAATTTGTCTATAGACTCTACTTCTTCACAGTCGAATCGAGAACTAGAGGCTGAGATGAAAAGATTGAAATTGGAATTAAAGCAAACAATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCGAAGAACAAGGCTAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGACTAGCTGAAGAGACTGCTCTTGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCGGCGGCAGCACAAAAGCTGGCTGAAAGAGAAGCCCAGAGACGAAAACAGGCTGAAATGAAGGCCAGAAAAGAGTCAGAAGAGAAAAAACGAGCATTGAGTGCTTTAGCTCATAATGATGTCCGATATCGAAAATACACAATAGAGGAGATTGAGGAATCTACTGATAGGTTCTCTGAAAAGGTGAAGATTGGAGAAGGTGGGTATGGCCCTGTTTATGGAGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGATGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTTCTCTGTTGTATTAGACATCCAAACATGGTCCTCCTTCTAGGGGCATGTCCTGAGTATGGTTGCTTGGTATACGAATACATGCATAATGGGAGCTTAGAAGATAGACTTCTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGTTTCAAAATTTCAGCTGAAATTGCAACTGCGCTTCTTTTTCTTCACCAAGCAAAGCCAGAACCCCTTGTGCATAGGGATCTTAAACCAGCTAACATTCTCTTAGACCGCAATTTTGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGGTTAGTCCCGCCTTCTGTTGCTGATCAAGTCACCCAATATCACATGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGAAAGTTGACTACAAAATCAGATATTTACTCATTTGGGATAATGTTACTTCAAATTATCACAGCCAAGCCTGCAATGGGTCTGGCTCACCATGTGCAAAGGGCCATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTGCAAAACTGGCATTGAAGTGCGCTGAACTGAGGAAAAGAGACAGACCAGATCTTGGAACAGATATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGTAGGAGTTCAGACAAACGTGAAGGTCGGAATCACTTTCCACACTCTGCCACATCAAGTTCCAGTTCATAG 2163 44.15 MPPEDGIPLNTTAVAVDKDKNSQHAVRWAIDHLVLSNPLIILIHVRHKSNHHQGAGDSENGDTDAQQLFVPYRGYCARKGVQLREVVLDDTDIPKAIVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSITKTAPDFCSVYVISKGKIISARAALRQVANTAMPPRQPSALGAQPNAQPDSNNEQENGARGQPTREGWKSAGTERMLNERNAAKPTKALIRERPKTSPTNISLDNIEVQNRGSRSSFSNDSISDDNLSTASIAFVSMDGSCQNLDFSTCSNLSIDSTSSQSNRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEETALAIAEMEKAKCKAAIEAAAAAQKLAEREAQRRKQAEMKARKESEEKKRALSALAHNDVRYRKYTIEEIEESTDRFSEKVKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLLRRGNTPPLSWRRRFKISAEIATALLFLHQAKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPAMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFAKLALKCAELRKRDRPDLGTDIVPELNRLRDIGRSSDKREGRNHFPHSATSSSSS 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21157119 21161759 + Sed0003529.1 Sed11g0867 729513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0867 720 Gene3D Phosphorylase Kinase; domain 1 395 500 - -
Sed11g0867 720 MobiDBLite consensus disorder prediction 173 192 - -
Sed11g0867 720 Gene3D HUPs 9 147 IPR014729 -
Sed11g0867 720 MobiDBLite consensus disorder prediction 164 253 - -
Sed11g0867 720 Pfam Universal stress protein family 14 125 IPR006016 -
Sed11g0867 720 PANTHER OS02G0152300 PROTEIN 13 705 IPR051348 -
Sed11g0867 720 Gene3D Transferase(Phosphotransferase) domain 1 501 712 - -
Sed11g0867 720 FunFam U-box domain-containing protein 51 501 701 - -
Sed11g0867 720 MobiDBLite consensus disorder prediction 696 720 - -
Sed11g0867 720 Coils Coil 294 314 - -
Sed11g0867 720 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 400 500 - -
Sed11g0867 720 SMART serkin_6 428 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0867 720 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 126 - -
Sed11g0867 720 MobiDBLite consensus disorder prediction 382 401 - -
Sed11g0867 720 CDD STKc_IRAK 434 694 - -
Sed11g0867 720 SUPERFAMILY Protein kinase-like (PK-like) 411 683 IPR011009 -
Sed11g0867 720 Pfam Protein tyrosine and serine/threonine kinase 432 683 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0867 720 CDD STK_N 11 148 - -
Sed11g0867 720 MobiDBLite consensus disorder prediction 696 710 - -
Sed11g0867 720 ProSiteProfiles Protein kinase domain profile. 428 691 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0867 720 Coils Coil 371 405 - -
Sed11g0867 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0867 720 MobiDBLite consensus disorder prediction 225 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1782 Sed-Chr8:32600125 Sed11g0867 Sed-Chr11:21157119 0.00E+00 dispersed
Sed08g1783 Sed-Chr8:32600125 Sed11g0867 Sed-Chr11:21157119 0.00E+00 dispersed
Sed09g1670 Sed-Chr9:40101459 Sed11g0867 Sed-Chr11:21157119 1.50E-179 dispersed
Sed09g1671 Sed-Chr9:40101459 Sed11g0867 Sed-Chr11:21157119 1.50E-179 dispersed
Sed11g0867 Sed-Chr11:21157119 Sed11g0869 Sed-Chr11:21157119 0.00E+00 dispersed
Sed11g0867 Sed-Chr11:21157119 Sed11g0868 Sed-Chr11:21157119 0.00E+00 tandem
Sed11g0867 Sed-Chr11:21157119 Sed08g1780 Sed-Chr8:32600125 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79895 PF07714 PK_Tyr_Ser-Thr 1.90E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0867 - - - 0.0