Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0868 ATGGGGTGTCTCAGGAAATTTAAAGGTCCTGATGTTCCAACCAGCATAACAAAAACTGCCCCAGACTTTTGTTCTGTGTATGTAATATCAAAAGGGAAGATAATATCTGCCAGAGCAGCTCTTCGGCAAGTGGCTAATACTGCCATGCCACCAAGACAACCATCAGCACTTGGAGCTCAGCCAAATGCTCAACCAGACAGCAACAATGAACAAGAAAATGGAGCCAGAGGGCAACCGACAAGGGAAGGATGGAAAAGTGCAGGTACAGAGAGAATGCTCAATGAAAGGAATGCTGCAAAACCGACAAAAGCATTGATTCGTGAGAGGCCGAAAACTTCTCCAACTAATATATCATTGGATAATATCGAGGTTCAAAATCGAGGGTCTAGGTCTTCATTTAGCAATGATTCGATCTCCGATGACAATCTGTCGACTGCGTCGATAGCTTTTGTTTCAATGGATGGGAGTTGTCAAAATTTGGATTTTAGTACTTGTTCAAATTTGTCTATAGACTCTACTTCTTCACAGTCGAATCGAGAACTAGAGGCTGAGATGAAAAGATTGAAATTGGAATTAAAGCAAACAATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCGAAGAACAAGGCTAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGACTAGCTGAAGAGACTGCTCTTGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCGGCGGCAGCACAAAAGCTGGCTGAAAGAGAAGCCCAGAGACGAAAACAGGCTGAAATGAAGGCCAGAAAAGAGTCAGAAGAGAAAAAACGAGCATTGAGTGCTTTAGCTCATAATGATGTCCGATATCGAAAATACACAATAGAGGAGATTGAGGAATCTACTGATAGGTTCTCTGAAAAGGTGAAGATTGGAGAAGGTGGGTATGGCCCTGTTTATGGAGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGATGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTTCTCTGTTGTATTAGACATCCAAACATGGTCCTCCTTCTAGGGGCATGTCCTGAGTATGGTTGCTTGGTATACGAATACATGCATAATGGGAGCTTAGAAGATAGACTTCTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGTTTCAAAATTTCAGCTGAAATTGCAACTGCGCTTCTTTTTCTTCACCAAGCAAAGCCAGAACCCCTTGTGCATAGGGATCTTAAACCAGCTAACATTCTCTTAGACCGCAATTTTGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGGTTAGTCCCGCCTTCTGTTGCTGATCAAGTCACCCAATATCACATGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGAAAGTTGACTACAAAATCAGATATTTACTCATTTGGGATAATGTTACTTCAAATTATCACAGCCAAGCCTGCAATGGGTCTGGCTCACCATGTGCAAAGGGCCATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTGCAAAACTGGCATTGAAGTGCGCTGAACTGAGGAAAAGAGACAGACCAGATCTTGGAACAGATATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGTAGGAGTTCAGACAAACGTGAAGGTCGGAATCACTTTCCACACTCTGCCACATCAAGTTCCAGTTCATAG 1815 43.42 MGCLRKFKGPDVPTSITKTAPDFCSVYVISKGKIISARAALRQVANTAMPPRQPSALGAQPNAQPDSNNEQENGARGQPTREGWKSAGTERMLNERNAAKPTKALIRERPKTSPTNISLDNIEVQNRGSRSSFSNDSISDDNLSTASIAFVSMDGSCQNLDFSTCSNLSIDSTSSQSNRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEETALAIAEMEKAKCKAAIEAAAAAQKLAEREAQRRKQAEMKARKESEEKKRALSALAHNDVRYRKYTIEEIEESTDRFSEKVKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLLRRGNTPPLSWRRRFKISAEIATALLFLHQAKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPAMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFAKLALKCAELRKRDRPDLGTDIVPELNRLRDIGRSSDKREGRNHFPHSATSSSSS 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21157119 21161759 + Sed0003529.2 Sed11g0868 729514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0868 604 SMART serkin_6 312 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0868 604 MobiDBLite consensus disorder prediction 580 604 - -
Sed11g0868 604 SUPERFAMILY Protein kinase-like (PK-like) 295 567 IPR011009 -
Sed11g0868 604 Coils Coil 178 198 - -
Sed11g0868 604 Pfam Protein tyrosine and serine/threonine kinase 316 567 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0868 604 MobiDBLite consensus disorder prediction 57 76 - -
Sed11g0868 604 CDD STKc_IRAK 318 578 - -
Sed11g0868 604 Gene3D Transferase(Phosphotransferase) domain 1 385 596 - -
Sed11g0868 604 PANTHER OS02G0152300 PROTEIN 7 589 IPR051348 -
Sed11g0868 604 MobiDBLite consensus disorder prediction 48 139 - -
Sed11g0868 604 MobiDBLite consensus disorder prediction 580 594 - -
Sed11g0868 604 ProSiteProfiles Protein kinase domain profile. 312 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0868 604 MobiDBLite consensus disorder prediction 109 139 - -
Sed11g0868 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0868 604 Coils Coil 255 289 - -
Sed11g0868 604 Gene3D Phosphorylase Kinase; domain 1 279 384 - -
Sed11g0868 604 FunFam U-box domain-containing protein 51 385 585 - -
Sed11g0868 604 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 284 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0868 Sed-Chr11:21157119 Sed11g0870 Sed-Chr11:21157119 0.00E+00 dispersed
Sed11g0867 Sed-Chr11:21157119 Sed11g0868 Sed-Chr11:21157119 0.00E+00 tandem
Sed11g0868 Sed-Chr11:21157119 Sed11g0869 Sed-Chr11:21157119 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79896 PF07714 PK_Tyr_Ser-Thr 1.30E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0868 - - - 0.0