Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0871 ATGTCAGAGGGCGCCGGTGATTCTGAAAATGGGGATACTGATGCGCAGCAGCTGTTTGTTCCCTACCGTGGATATTGTGCGCGTAAAGGGGTTCAGTTGAGGGAGGTTGTTCTTGACGATACTGATATTCCCAAAGCAATTGTGGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTCGGAGCTTCAACAAGGAGTGCTTTAGCTAGGAAATTTAAAGGTCCTGATGTTCCAACCAGCATAACAAAAACTGCCCCAGACTTTTGTTCTGTGTATGTAATATCAAAAGGGAAGATAATATCTGCCAGAGCAGCTCTTCGGCAAGTGGCTAATACTGCCATGCCACCAAGACAACCATCAGCACTTGGAGCTCAGCCAAATGCTCAACCAGACAGCAACAATGAACAAGAAAATGGAGCCAGAGGGCAACCGACAAGGGAAGGATGGAAAAGTGCAGGTACAGAGAGAATGCTCAATGAAAGGAATGCTGCAAAACCGACAAAAGCATTGATTCGTGAGAGGCCGAAAACTTCTCCAACTAATATATCATTGGATAATATCGAGGTTCAAAATCGAGGGTCTAGGTCTTCATTTAGCAATGATTCGATCTCCGATGACAATCTGTCGACTGCGTCGATAGCTTTTGTTTCAATGGATGGGAGTTGTCAAAATTTGGATTTTAGTACTTGTTCAAATTTGTCTATAGACTCTACTTCTTCACAGTCGAATCGAGAACTAGAGGCTGAGATGAAAAGATTGAAATTGGAATTAAAGCAAACAATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCGAAGAACAAGGCTAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGACTAGCTGAAGAGACTGCTCTTGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCGGCGGCAGCACAAAAGCTGGCTGAAAGAGAAGCCCAGAGACGAAAACAGGCTGAAATGAAGGCCAGAAAAGAGTCAGAAGAGAAAAAACGAGCATTGAGTGCTTTAGCTCATAATGATGTCCGATATCGAAAATACACAATAGAGGAGATTGAGGAATCTACTGATAGGTTCTCTGAAAAGGTGAAGATTGGAGAAGGTGGGTATGGCCCTGTTTATGGAGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGATGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTTCTCTGTTGTATTAGACATCCAAACATGGTCCTCCTTCTAGGGGCATGTCCTGAGTATGGTTGCTTGGTATACGAATACATGCATAATGGGAGCTTAGAAGATAGACTTCTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGTTTCAAAATTTCAGCTGAAATTGCAACTGCGCTTCTTTTTCTTCACCAAGCAAAGCCAGAACCCCTTGTGCATAGGGATCTTAAACCAGCTAACATTCTCTTAGACCGCAATTTTGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGGTTAGTCCCGCCTTCTGTTGCTGATCAAGTCACCCAATATCACATGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGAAAGTTGACTACAAAATCAGATATTTACTCATTTGGGATAATGTTACTTCAAATTATCACAGCCAAGCCTGCAATGGGTCTGGCTCACCATGTGCAAAGGGCCATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTGCAAAACTGGCATTGAAGTGCGCTGAACTGAGGAAAAGAGACAGACCAGATCTTGGAACAGATATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGTAGGAGTTCAGACAAACGTGAAGGTCGGAATCACTTTCCACACTCTGCCACATCAAGTTCCAGTTCATAG 2013 43.67 MSEGAGDSENGDTDAQQLFVPYRGYCARKGVQLREVVLDDTDIPKAIVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSITKTAPDFCSVYVISKGKIISARAALRQVANTAMPPRQPSALGAQPNAQPDSNNEQENGARGQPTREGWKSAGTERMLNERNAAKPTKALIRERPKTSPTNISLDNIEVQNRGSRSSFSNDSISDDNLSTASIAFVSMDGSCQNLDFSTCSNLSIDSTSSQSNRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEETALAIAEMEKAKCKAAIEAAAAAQKLAEREAQRRKQAEMKARKESEEKKRALSALAHNDVRYRKYTIEEIEESTDRFSEKVKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLLRRGNTPPLSWRRRFKISAEIATALLFLHQAKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPAMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFAKLALKCAELRKRDRPDLGTDIVPELNRLRDIGRSSDKREGRNHFPHSATSSSSS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21157119 21161759 + Sed0003529.5 Sed11g0871 729517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0871 670 Pfam Protein tyrosine and serine/threonine kinase 382 633 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0871 670 SUPERFAMILY Protein kinase-like (PK-like) 361 633 IPR011009 -
Sed11g0871 670 Gene3D Transferase(Phosphotransferase) domain 1 451 662 - -
Sed11g0871 670 Gene3D Phosphorylase Kinase; domain 1 344 450 - -
Sed11g0871 670 SMART serkin_6 378 638 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0871 670 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 350 450 - -
Sed11g0871 670 MobiDBLite consensus disorder prediction 175 203 - -
Sed11g0871 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0871 670 MobiDBLite consensus disorder prediction 123 142 - -
Sed11g0871 670 Coils Coil 321 355 - -
Sed11g0871 670 PANTHER OS02G0152300 PROTEIN 3 655 IPR051348 -
Sed11g0871 670 ProSiteProfiles Protein kinase domain profile. 378 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0871 670 MobiDBLite consensus disorder prediction 114 203 - -
Sed11g0871 670 CDD STK_N 12 98 - -
Sed11g0871 670 Coils Coil 244 264 - -
Sed11g0871 670 MobiDBLite consensus disorder prediction 646 660 - -
Sed11g0871 670 MobiDBLite consensus disorder prediction 332 351 - -
Sed11g0871 670 CDD STKc_IRAK 384 644 - -
Sed11g0871 670 FunFam U-box domain-containing protein 51 451 651 - -
Sed11g0871 670 MobiDBLite consensus disorder prediction 646 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0869 Sed-Chr11:21157119 Sed11g0871 Sed-Chr11:21157119 0.00E+00 dispersed
Sed11g0871 Sed-Chr11:21157119 Sed13g2108 Sed-Chr13:25785078 1.60E-186 dispersed
Sed11g0870 Sed-Chr11:21157119 Sed11g0871 Sed-Chr11:21157119 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79899 PF07714 PK_Tyr_Ser-Thr 1.60E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0871 - - - 0.0