Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0872 | ATGGCTGGTTTGGCACCTGAAGGAACCCAATTCGATGCACGTCAATATGATTCCAAGATGAATGATTTACTTGGGGGAGATAGCCAAGATTTTTTCACCTCATATGATGAAGTCTACGAAAGTTTTGATTCCATGGGTTTACTGGAGAACCTCTTAAGAGGAATATACGCGTATGGTTTTGAAAAGCCTTCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCTACTTTCTGCTCTGGAATTTTGCAGCAGCTGGATTATGGACTAGTTGATTGCCAGTCATTAGTTCTTGCACCCACCCGAGAATTGGCACAACAGATCGAAAAGGTTATGCGAGCATTAGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGCGGAACCAGTGTCCGTGAAGATCAACGCATTCTCTCAAGTGGCGTCCATGTTGTTGTTGGCACCCCTGGTCGTGTGTTTGATATGCTGCGACGGCGGTCACTACGCTCTGATCACATTAAGATGTTTGTGCTAGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATCTATGATATTTTCCAGCTTCTTCCACCAAAGATTCAGGTTGGTGTTTTCTCTGCTACAATGCCGCCCGAGGCCCTCGAGATAACTAGGAAATTCATGAATAAACCTGTGCGAATTTTGGTGAAACGCGACGAGCTCACTCTTGAGGGTATCAAACAATTCCATGTCAATGTTGACAAAGAGGAGTGGAAACTTGAGACCCTTTGCGACCTTTACGAAACTCTGGCAATTACCCAGAGTGTTATTTTTGTTAATACTAGGCGCAAAGTAGATTGGCTTACTGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACGCATGGCGATATGGACCAAAACTCTAGAGATATCATCATGCGAGAGTTTCGATCTGGTTCATCCCGCGTTCTTATTACTACTGATCTCTTGGCCAGAGGAATTGATGTCCAACAAGTTTCCCTTGTTATAAACTATGATCTTCCTACTCAGCCAGAGAATTATCTCCATCGAATTGGTCGTAGTGGACGATTTGGGAGGAAGGGTGTTGCTATTAATTTTGTCACCTCAGACGACGAAAGGATGCTGTTTGACATCCAAAAGTTCTACAATGTTATTGTCGAGGAGCTGCCAGCAAATGTTGCGGACCTCATTTGA | 1242 | 44.28 | MAGLAPEGTQFDARQYDSKMNDLLGGDSQDFFTSYDEVYESFDSMGLLENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRRSLRSDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLFDIQKFYNVIVEELPANVADLI | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21168701 | 21172266 | + | Sed0002016.2 | Sed11g0872 | 729518 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0872 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
Sed11g0872 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724(InterPro) | |
Sed11g0872 | 413 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 37 | 399 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Sed11g0872 | 413 | FunFam | Eukaryotic initiation factor 4A-II | 28 | 247 | - | - | |
Sed11g0872 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
Sed11g0872 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - | |
Sed11g0872 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
Sed11g0872 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
Sed11g0872 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
Sed11g0872 | 413 | FunFam | Eukaryotic initiation factor 4A-III | 248 | 413 | - | - | |
Sed11g0872 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
Sed11g0872 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
Sed11g0872 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 227 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Sed11g0872 | 413 | CDD | DEADc_EIF4A | 45 | 242 | - | - | |
Sed11g0872 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - | |
Sed11g0872 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1301 | Sed-Chr5:25302551 | Sed11g0872 | Sed-Chr11:21168701 | 1.90E-142 | dispersed | |
Sed09g1673 | Sed-Chr9:40115893 | Sed11g0872 | Sed-Chr11:21168701 | 4.90E-223 | dispersed | |
Sed11g0872 | Sed-Chr11:21168701 | Sed11g0874 | Sed-Chr11:21168819 | 4.10E-238 | dispersed | |
Sed11g0872 | Sed-Chr11:21168701 | Sed11g0873 | Sed-Chr11:21168819 | 4.10E-238 | tandem | |
Sed11g0872 | Sed-Chr11:21168701 | Sed08g1779 | Sed-Chr8:32579374 | 1.20E-232 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0872 | K03257 | - | vvi:100249159 | 784.252 |