Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0875 | ATGAATATTTGGTGTAGACTTGGGGGAGATAGCCAAGATTTTTTCACCTCATATGATGAAGTCTACGAAAGTTTTGATTCCATGGGTTTACTGGAGAACCTCTTAAGAGGAATATACGCGTATGGTTTTGAAAAGCCTTCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCTACTTTCTGCTCTGGAATTTTGCAGCAGCTGGATTATGGACTAGTTGATTGCCAGTCATTAGTTCTTGCACCCACCCGAGAATTGGCACAACAGATCGAAAAGGTTATGCGAGCATTAGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGCGGAACCAGTGTCCGTGAAGATCAACGCATTCTCTCAAGTGGCGTCCATGTTGTTGTTGGCACCCCTGGTCGTGTGTTTGATATGCTGCGACGGCGGTCACTACGCTCTGATCACATTAAGATGTTTGTGCTAGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATCTATGATATTTTCCAGCTTCTTCCACCAAAGATTCAGGTTGGTGTTTTCTCTGCTACAATGCCGCCCGAGGCCCTCGAGATAACTAGGAAATTCATGAATAAACCTGTGCGAATTTTGGTGAAACGCGACGAGCTCACTCTTGAGGGTATCAAACAATTCCATGTCAATGTTGACAAAGAGGAGTGGAAACTTGAGACCCTTTGCGACCTTTACGAAACTCTGGCAATTACCCAGAGTGTTATTTTTGTTAATACTAGGCGCAAAGTAGATTGGCTTACTGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACGCATGGCGATATGGACCAAAACTCTAGAGATATCATCATGCGAGAGTTTCGATCTGGTTCATCCCGCGTTCTTATTACTACTGATCTCTTGGCCAGAGGAATTGATGTCCAACAAGTTTCCCTTGTTATAAACTATGATCTTCCTACTCAGCCAGAGAATTATCTCCATCGAATTGGTCGTAGTGGACGATTTGGGAGGAAGGGTGTTGCTATTAATTTTGTCACCTCAGACGACGAAAGGATGCTGTTTGACATCCAAAAGTTCTACAATGTTATTGTCGAGGAGCTGCCAGCAAATGTTGCGGACCTCATTTGA | 1191 | 44.16 | MNIWCRLGGDSQDFFTSYDEVYESFDSMGLLENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRRSLRSDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLFDIQKFYNVIVEELPANVADLI | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21168819 | 21172266 | + | Sed0002016.4 | Sed11g0875 | 729521 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0875 | 396 | Gene3D | - | 13 | 230 | IPR027417 | - | |
Sed11g0875 | 396 | FunFam | Eukaryotic initiation factor 4A-III | 231 | 396 | - | - | |
Sed11g0875 | 396 | Pfam | Helicase conserved C-terminal domain | 249 | 357 | IPR001650 | - | |
Sed11g0875 | 396 | CDD | DEADc_EIF4A | 28 | 225 | - | - | |
Sed11g0875 | 396 | SMART | ultradead3 | 42 | 239 | IPR014001 | - | |
Sed11g0875 | 396 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 235 | 396 | IPR001650 | - | |
Sed11g0875 | 396 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 170 | 178 | IPR000629 | - | |
Sed11g0875 | 396 | CDD | SF2_C_DEAD | 236 | 366 | - | - | |
Sed11g0875 | 396 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 54 | 224 | IPR014001 | - | |
Sed11g0875 | 396 | Pfam | DEAD/DEAH box helicase | 48 | 210 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Sed11g0875 | 396 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 23 | 51 | IPR014014 | GO:0003724(InterPro) | |
Sed11g0875 | 396 | SMART | helicmild6 | 276 | 357 | IPR001650 | - | |
Sed11g0875 | 396 | FunFam | Eukaryotic initiation factor 4A-II | 11 | 230 | - | - | |
Sed11g0875 | 396 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 22 | 382 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Sed11g0875 | 396 | Gene3D | - | 231 | 396 | IPR027417 | - | |
Sed11g0875 | 396 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 92 | 377 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0873 | Sed-Chr11:21168819 | Sed11g0875 | Sed-Chr11:21168819 | 1.50E-224 | dispersed | |
Sed11g0875 | Sed-Chr11:21168819 | Sed12g0176 | Sed-Chr12:1004536 | 1.20E-72 | dispersed | |
Sed11g0874 | Sed-Chr11:21168819 | Sed11g0875 | Sed-Chr11:21168819 | 1.50E-224 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0875 | K03257 | - | cit:102624112 | 745.732 |