Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0875 ATGAATATTTGGTGTAGACTTGGGGGAGATAGCCAAGATTTTTTCACCTCATATGATGAAGTCTACGAAAGTTTTGATTCCATGGGTTTACTGGAGAACCTCTTAAGAGGAATATACGCGTATGGTTTTGAAAAGCCTTCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCTACTTTCTGCTCTGGAATTTTGCAGCAGCTGGATTATGGACTAGTTGATTGCCAGTCATTAGTTCTTGCACCCACCCGAGAATTGGCACAACAGATCGAAAAGGTTATGCGAGCATTAGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGCGGAACCAGTGTCCGTGAAGATCAACGCATTCTCTCAAGTGGCGTCCATGTTGTTGTTGGCACCCCTGGTCGTGTGTTTGATATGCTGCGACGGCGGTCACTACGCTCTGATCACATTAAGATGTTTGTGCTAGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATCTATGATATTTTCCAGCTTCTTCCACCAAAGATTCAGGTTGGTGTTTTCTCTGCTACAATGCCGCCCGAGGCCCTCGAGATAACTAGGAAATTCATGAATAAACCTGTGCGAATTTTGGTGAAACGCGACGAGCTCACTCTTGAGGGTATCAAACAATTCCATGTCAATGTTGACAAAGAGGAGTGGAAACTTGAGACCCTTTGCGACCTTTACGAAACTCTGGCAATTACCCAGAGTGTTATTTTTGTTAATACTAGGCGCAAAGTAGATTGGCTTACTGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACGCATGGCGATATGGACCAAAACTCTAGAGATATCATCATGCGAGAGTTTCGATCTGGTTCATCCCGCGTTCTTATTACTACTGATCTCTTGGCCAGAGGAATTGATGTCCAACAAGTTTCCCTTGTTATAAACTATGATCTTCCTACTCAGCCAGAGAATTATCTCCATCGAATTGGTCGTAGTGGACGATTTGGGAGGAAGGGTGTTGCTATTAATTTTGTCACCTCAGACGACGAAAGGATGCTGTTTGACATCCAAAAGTTCTACAATGTTATTGTCGAGGAGCTGCCAGCAAATGTTGCGGACCTCATTTGA 1191 44.16 MNIWCRLGGDSQDFFTSYDEVYESFDSMGLLENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRRSLRSDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLFDIQKFYNVIVEELPANVADLI 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21168819 21172266 + Sed0002016.4 Sed11g0875 729521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0875 396 Gene3D - 13 230 IPR027417 -
Sed11g0875 396 FunFam Eukaryotic initiation factor 4A-III 231 396 - -
Sed11g0875 396 Pfam Helicase conserved C-terminal domain 249 357 IPR001650 -
Sed11g0875 396 CDD DEADc_EIF4A 28 225 - -
Sed11g0875 396 SMART ultradead3 42 239 IPR014001 -
Sed11g0875 396 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 235 396 IPR001650 -
Sed11g0875 396 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Sed11g0875 396 CDD SF2_C_DEAD 236 366 - -
Sed11g0875 396 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 224 IPR014001 -
Sed11g0875 396 Pfam DEAD/DEAH box helicase 48 210 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed11g0875 396 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 23 51 IPR014014 GO:0003724(InterPro)
Sed11g0875 396 SMART helicmild6 276 357 IPR001650 -
Sed11g0875 396 FunFam Eukaryotic initiation factor 4A-II 11 230 - -
Sed11g0875 396 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 382 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Sed11g0875 396 Gene3D - 231 396 IPR027417 -
Sed11g0875 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 377 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0873 Sed-Chr11:21168819 Sed11g0875 Sed-Chr11:21168819 1.50E-224 dispersed
Sed11g0875 Sed-Chr11:21168819 Sed12g0176 Sed-Chr12:1004536 1.20E-72 dispersed
Sed11g0874 Sed-Chr11:21168819 Sed11g0875 Sed-Chr11:21168819 1.50E-224 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0875 K03257 - cit:102624112 745.732