Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0883 ATGCTTTTCTTCCAGGATTTCTGGCAGGTTCTCTCTCTTCAAGCTTTCCGGGATCGAACTCGTTTTCTGTCTCGGGTACTATCCGAATCAATGGGCAACTCCTCGTGCGGCGTTTCCGAGTTGGACCTCTGTAGAGACGATTCCGCCGCCCTGCATTTCAAGCTCATCGCAATCGCTGCGATTCTCACATCCGGAGTGCTGGGGATCGCCATCCCGCTGTACGCCAAACACCGGCGCTTCCTCAAGACCGACGGCAATCTGTTCGTCGGGGCCAAGGCGTTCGCCGCCGGCGTCATTCTGGCCACGGCATTCGTCCACATGCTCCCGGACGGTTCGGAGGCTCTGTCGGATCCGTGCCTGCCCGAGTTCCCGTGGTCCAAATTCCCCTTCTCGGGATTCTTCGCCATGATGGCCTCCTTGTTCACGCTCCTCGTGGATTTCGTGGGCACCCAGTACTACGAGCGCAAGCAGGAGCCCAACCGGGTCGGCTTGCTCGGGGAACCCGACACCGATGCGAAGAAGGTGTTTGGGGAGGAGGACGGCGGGGGTATGCACATTGTGGGAATGCATGCCCACGTGGCGCACCACCACCATAGTCATCCCCACGGGAAGGACGCCTGTGACGGCCACGTCACGCTCCATAATCATTCCCATTCCCATTCCTATTCTCACTCTCATGGCCTCCACGCCCACGATGACGAATCCGGTGTACGACATGTCGTTGTTTCCCAGATTTTGGAGCTTGGAATAGTGTCACATTCAGTGATAATAGGGCTGTCACTGGGAGTGTCACACAGCCCATGCACCATAAGACCCTTAATTGCAGCCCTGTCTTTCCATCAATTCTTTGAAGGCTTTGCCCTTGGAGGCTGCATCTCTCAGGCTCAGTTCAACACCTTCTCCACCTCCCTCATGGCCTTCTTCTTCGCGATCACCACTCCCATGGGGATCTCCATAGGCGCTGCCATCTCCTCGACGTACAACCCGAACAGCACCGGGGCATTGGTTGCAGAGGGCATTTTGGACTCCCTATCTGCCGGAATTCTTGTGTATATGGCTCTCGTTGATTTGATCGCGGCCGATTTTCTTAGTAAGAGAATGAGCTGCAATTTTAGGCTTCAAATTGTTTCGTATTGTATGCTTTTCCTTGGTGCGGGATTGATGTCTTCGCTCGCGCTTTGGGCTTGA 1188 55.39 MLFFQDFWQVLSLQAFRDRTRFLSRVLSESMGNSSCGVSELDLCRDDSAALHFKLIAIAAILTSGVLGIAIPLYAKHRRFLKTDGNLFVGAKAFAAGVILATAFVHMLPDGSEALSDPCLPEFPWSKFPFSGFFAMMASLFTLLVDFVGTQYYERKQEPNRVGLLGEPDTDAKKVFGEEDGGGMHIVGMHAHVAHHHHSHPHGKDACDGHVTLHNHSHSHSYSHSHGLHAHDDESGVRHVVVSQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTFSTSLMAFFFAITTPMGISIGAAISSTYNPNSTGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCMLFLGAGLMSSLALWA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21321665 21323913 + Sed0027256.1 Sed11g0883 729529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0883 395 NCBIfam ZIP zinc/iron transport family 36 395 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Sed11g0883 395 PANTHER ZINC/IRON TRANSPORTER 48 394 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Sed11g0883 395 Pfam ZIP Zinc transporter 52 392 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1963 Sed-Chr8:34085745 Sed11g0883 Sed-Chr11:21321665 6.90E-69 dispersed
Sed11g0883 Sed-Chr11:21321665 Sed11g0885 Sed-Chr11:21321665 4.90E-196 dispersed
Sed11g0883 Sed-Chr11:21321665 Sed11g0884 Sed-Chr11:21321665 4.90E-196 tandem
Sed05g3780 Sed-Chr5:45556015 Sed11g0883 Sed-Chr11:21321665 1.30E-56 transposed
Sed11g0883 Sed-Chr11:21321665 Sed08g1768 Sed-Chr8:32525130 1.00E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0883 K14709 - csv:101218224 609.372