Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0899 ATGAGTAACCGACCACGGTTCAAAAACCCACCACCGTCTCTAAAAAAAAAAACTGACAGTTCCATTTTCCATCTTCAAAACCCTTCCCACTCTGTCCCTCTCTCCCACAATTTCACCACCATCGCTGAATCAATGCTCCTCCATCCGACGGCCCACATTTCACCCTGCCCCGGACACGTGTCGCCGCCGCCCATGGACTTCGATTCCTCCCTCTGGGGCGATGACCGATTCCGGATGTATGAGTTCAAAGTCCGCACCTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGCCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGACCCCAGGAACTTCAACTATTCCGCCACTGAGTGCCCTGATTCGCGCCATGGGGTTTGTACCAAAGGGGACGCCTGTGACCTCGCTCATGGAACCTTCGAGATTTGGCTCCACCCGGATCGCTACCGGACTCAGCCCTGCCGCGACGGAATCGCCTGCCGCCGCCGTATCTGTTTCTTCGCCCACACGCCCGACCAACTCCGCATTCCGGCGAAACAGAGCCTCCGGTCTCCAAGGGCGGCCGCTGCGCTATCCTCTCCCACTTCGACCCTATTCTCGCCCTTGTCGGAGTCGCCGCCGTTGTCGCCGGTCAGCCCTGTAACCACCGGCGACGAATCGTTCGGCAGATTGGTCGCATGGATGCAGAAGGTTAAGATAGTTGAGGAATTAAAGAGAAGTCCGGCGGTCTCCGGCTTTGGTTCAAGTCTTCGACGGAGCTCCGGCGGATTGGATGGGTGGGATATGAATTACGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACATTCGAGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCCATGTTGATATTGGCCGGATCTCGAAGTTAA 915 56.72 MSNRPRFKNPPPSLKKKTDSSIFHLQNPSHSVPLSHNFTTIAESMLLHPTAHISPCPGHVSPPPMDFDSSLWGDDRFRMYEFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRNFNYSATECPDSRHGVCTKGDACDLAHGTFEIWLHPDRYRTQPCRDGIACRRRICFFAHTPDQLRIPAKQSLRSPRAAAALSSPTSTLFSPLSESPPLSPVSPVTTGDESFGRLVAWMQKVKIVEELKRSPAVSGFGSSLRRSSGGLDGWDMNYEEEPAMERVESGRNIRAQMYAKLMRENSMLILAGSRS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21783224 21784371 - Sed0026071.1 Sed11g0899 729545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0899 304 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872(InterPro)
Sed11g0899 304 Gene3D - 112 185 - -
Sed11g0899 304 MobiDBLite consensus disorder prediction 1 20 - -
Sed11g0899 304 PANTHER UNKEMPT FAMILY MEMBER 60 237 IPR045234 -
Sed11g0899 304 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
Sed11g0899 304 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0899 Sed-Chr11:21783224 Sed12g1796 Sed-Chr12:29019216 3.10E-57 dispersed
Sed11g0899 Sed-Chr11:21783224 Sed13g1846 Sed-Chr13:23420974 2.20E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0899 - - - 0.0