Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0901 | ATGGAAGATCAGTACAACAACCCTCATAGCGATAGCTGTAGGGGAAATTTCTTGTACACTTCAGTACCTATCTTGGCCACCCATTCCTCCTCTCCTGCGGGCAATTTCGTAATTAGACCCCCCTCTTCCAATGGAGCTGGATCATCATCATCCCCCTCACTTTTTAATCACATGGCCCTGAATCATACTAACAACAATCTCCCCCCCGACTGTAGCTTTCCTCCACCGTCCGATCGAGACGAGTTCCGACATGTTAAACTCGAGCCGAGAGGCTCACACTCTCAACAGCACCACCAAGTTCATGACTTTCATTACCATCTCATGAGAGAGTTTCAAATTAGTAGCGGCGGAAGTGGCGACGTCGATGCCTTGAAGGCTAAACTTATCTCTCACTCTAGATTCTCTAATCTCCTCCAAGCTTTCCTCGATTGCCAAAAGGTGGGAGCTCCGCCAGAGGTGGAAGCGAAACTTGCTTCAGTAAGGGAGGAATTTGAGCGGCGGCGGTCTTCAATGGCATCGACTGGGGGTTTCAGTGATCCAGAACTTGATCATTTCATGGAAGCTTACTATGAGATGCTGGTGAAGTATAGAGAGGAGCTGACAAGGCCTATTCAAGAAGCTGAAGATTTCATGAAGAGAATTCAATCTCAGCTCAATACTCTTTGCAATGGCTCCTTTCAAATCTTACAATCTGGAACAGAAGAGAAATGGGAAGGAATAGGATCATCATCAGAGGAGCAAGAGACGATGGGCGGGGAAGCGGAAAGAGAATTAGCAACGGAGCAAATCGACCCGCGCGCAGAAGAGCGAGAGCTAAAGAATCACTTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAAGAGCTTTCGAAGAAAAAGAAGAAAGGAAAGCTCCCAAAAGACGCAAGACAAGAGCTCCTACGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCAGAGAAGCTGGCACTGGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTTATTAACCAAAGGAAAAGGCATTGGAAGCCCTCTGAGGAAGTGCAGTTCATGGGCATGGACGGGTTTTACCATCCAAGTGCTGCTTTTTACTTCGATCATGGCCATTACATGGCCGATCCCCATTATCGTTTGGGTCCATAA | 1173 | 47.06 | MEDQYNNPHSDSCRGNFLYTSVPILATHSSSPAGNFVIRPPSSNGAGSSSSPSLFNHMALNHTNNNLPPDCSFPPPSDRDEFRHVKLEPRGSHSQQHHQVHDFHYHLMREFQISSGGSGDVDALKAKLISHSRFSNLLQAFLDCQKVGAPPEVEAKLASVREEFERRRSSMASTGGFSDPELDHFMEAYYEMLVKYREELTRPIQEAEDFMKRIQSQLNTLCNGSFQILQSGTEEKWEGIGSSSEEQETMGGEAERELATEQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEEVQFMGMDGFYHPSAAFYFDHGHYMADPHYRLGP | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21878629 | 21889731 | + | Sed0008933.1 | Sed11g0901 | 729547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0901 | 390 | Pfam | KNOX2 domain | 178 | 222 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0901 | 390 | Gene3D | - | 288 | 360 | - | - | |
Sed11g0901 | 390 | ProSiteProfiles | ELK domain profile. | 271 | 291 | IPR005539 | GO:0003677(InterPro) | |
Sed11g0901 | 390 | SMART | ELK_2 | 271 | 292 | IPR005539 | GO:0003677(InterPro) | |
Sed11g0901 | 390 | MobiDBLite | consensus disorder prediction | 30 | 61 | - | - | |
Sed11g0901 | 390 | Pfam | KNOX1 domain | 123 | 165 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0901 | 390 | Pfam | ELK domain | 271 | 292 | IPR005539 | GO:0003677(InterPro) | |
Sed11g0901 | 390 | ProSitePatterns | 'Homeobox' domain signature. | 329 | 352 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed11g0901 | 390 | SMART | KNOX2_2 | 172 | 223 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0901 | 390 | SUPERFAMILY | Homeodomain-like | 292 | 366 | IPR009057 | - | |
Sed11g0901 | 390 | SMART | KNOX1_2 | 122 | 166 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g0901 | 390 | Pfam | Homeobox KN domain | 311 | 350 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed11g0901 | 390 | SMART | HOX_1 | 293 | 358 | IPR001356 | GO:0003677(InterPro) | |
Sed11g0901 | 390 | ProSiteProfiles | 'Homeobox' domain profile. | 291 | 354 | IPR001356 | GO:0003677(InterPro) | |
Sed11g0901 | 390 | CDD | homeodomain | 303 | 355 | IPR001356 | GO:0003677(InterPro) | |
Sed11g0901 | 390 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 112 | 361 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0901 | Sed-Chr11:21878629 | Sed11g1865 | Sed-Chr11:33267702 | 4.40E-104 | dispersed | |
Sed11g0901 | Sed-Chr11:21878629 | Sed13g1842 | Sed-Chr13:23357092 | 3.10E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39929 | PF03791 | KNOX2 | 8.40E-23 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0901 | - | - | - | 0.0 |