Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0901 ATGGAAGATCAGTACAACAACCCTCATAGCGATAGCTGTAGGGGAAATTTCTTGTACACTTCAGTACCTATCTTGGCCACCCATTCCTCCTCTCCTGCGGGCAATTTCGTAATTAGACCCCCCTCTTCCAATGGAGCTGGATCATCATCATCCCCCTCACTTTTTAATCACATGGCCCTGAATCATACTAACAACAATCTCCCCCCCGACTGTAGCTTTCCTCCACCGTCCGATCGAGACGAGTTCCGACATGTTAAACTCGAGCCGAGAGGCTCACACTCTCAACAGCACCACCAAGTTCATGACTTTCATTACCATCTCATGAGAGAGTTTCAAATTAGTAGCGGCGGAAGTGGCGACGTCGATGCCTTGAAGGCTAAACTTATCTCTCACTCTAGATTCTCTAATCTCCTCCAAGCTTTCCTCGATTGCCAAAAGGTGGGAGCTCCGCCAGAGGTGGAAGCGAAACTTGCTTCAGTAAGGGAGGAATTTGAGCGGCGGCGGTCTTCAATGGCATCGACTGGGGGTTTCAGTGATCCAGAACTTGATCATTTCATGGAAGCTTACTATGAGATGCTGGTGAAGTATAGAGAGGAGCTGACAAGGCCTATTCAAGAAGCTGAAGATTTCATGAAGAGAATTCAATCTCAGCTCAATACTCTTTGCAATGGCTCCTTTCAAATCTTACAATCTGGAACAGAAGAGAAATGGGAAGGAATAGGATCATCATCAGAGGAGCAAGAGACGATGGGCGGGGAAGCGGAAAGAGAATTAGCAACGGAGCAAATCGACCCGCGCGCAGAAGAGCGAGAGCTAAAGAATCACTTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAAGAGCTTTCGAAGAAAAAGAAGAAAGGAAAGCTCCCAAAAGACGCAAGACAAGAGCTCCTACGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCAGAGAAGCTGGCACTGGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTTATTAACCAAAGGAAAAGGCATTGGAAGCCCTCTGAGGAAGTGCAGTTCATGGGCATGGACGGGTTTTACCATCCAAGTGCTGCTTTTTACTTCGATCATGGCCATTACATGGCCGATCCCCATTATCGTTTGGGTCCATAA 1173 47.06 MEDQYNNPHSDSCRGNFLYTSVPILATHSSSPAGNFVIRPPSSNGAGSSSSPSLFNHMALNHTNNNLPPDCSFPPPSDRDEFRHVKLEPRGSHSQQHHQVHDFHYHLMREFQISSGGSGDVDALKAKLISHSRFSNLLQAFLDCQKVGAPPEVEAKLASVREEFERRRSSMASTGGFSDPELDHFMEAYYEMLVKYREELTRPIQEAEDFMKRIQSQLNTLCNGSFQILQSGTEEKWEGIGSSSEEQETMGGEAERELATEQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEEVQFMGMDGFYHPSAAFYFDHGHYMADPHYRLGP 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21878629 21889731 + Sed0008933.1 Sed11g0901 729547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0901 390 Pfam KNOX2 domain 178 222 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0901 390 Gene3D - 288 360 - -
Sed11g0901 390 ProSiteProfiles ELK domain profile. 271 291 IPR005539 GO:0003677(InterPro)
Sed11g0901 390 SMART ELK_2 271 292 IPR005539 GO:0003677(InterPro)
Sed11g0901 390 MobiDBLite consensus disorder prediction 30 61 - -
Sed11g0901 390 Pfam KNOX1 domain 123 165 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0901 390 Pfam ELK domain 271 292 IPR005539 GO:0003677(InterPro)
Sed11g0901 390 ProSitePatterns 'Homeobox' domain signature. 329 352 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed11g0901 390 SMART KNOX2_2 172 223 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0901 390 SUPERFAMILY Homeodomain-like 292 366 IPR009057 -
Sed11g0901 390 SMART KNOX1_2 122 166 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g0901 390 Pfam Homeobox KN domain 311 350 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed11g0901 390 SMART HOX_1 293 358 IPR001356 GO:0003677(InterPro)
Sed11g0901 390 ProSiteProfiles 'Homeobox' domain profile. 291 354 IPR001356 GO:0003677(InterPro)
Sed11g0901 390 CDD homeodomain 303 355 IPR001356 GO:0003677(InterPro)
Sed11g0901 390 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 112 361 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0901 Sed-Chr11:21878629 Sed11g1865 Sed-Chr11:33267702 4.40E-104 dispersed
Sed11g0901 Sed-Chr11:21878629 Sed13g1842 Sed-Chr13:23357092 3.10E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39929 PF03791 KNOX2 8.40E-23 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0901 - - - 0.0