Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0913 ATGCTGGTTCTGAGTTGTGGAGCGCAGATTCTAGATCTAGAAACCGTCGTCAAAGATGGGATCCTCGGCGGTGGCGGCGCCGCCCTCATCTCCGGCGGCGGTGCTGAGAAGCTAGATCTGAAGGAGATGATTGAGGAGCTGGAATCGTCTATAGAGGTCCCATCGGTGTTCATCTGCCCGATTTCGCTCGAGCCGATGCAAGATCCGGTCACCCTTTGCTCCGGGCAGACCTACGAGCGGTGCAACATTCAGAAATGGTTCAGCTTAGGGCACCTAACCTGCCCGACAACAATGCAAGAGCTATGGGATGATTCTGTCACACCCAATCGGACCCTTCACCAGTTGATTCACACATGGTTTTCCCAAAAGTATTTAGCTTTGAAGAAGAGATCTGAAGACGTGCAAGGGAGAGTTTTGGAGCTGTTGGATTCGTTGAAAAAGGTCAAGGGTCAAGCTAGGGTTCAGTCGTTGAAAGATCTCCGACATGTCGTCACAACCCATAGCTCCGGCAAGAAAATGGTGGTCGACAACGGCGGCGTCGGCCTAATCTCTTCCCTTTTGGGTTCTTTCACTTCCCACGCTGTCGGGTCCGAAGCCGTTGGGATTCTCGTTAATTTGGATCTGGATTCAGATTTAAAGAAGAATCTGATTCAACCCACGACAATTTCCCTAATTGCAGACATTTTAAACGAAGGATCCATCGAAACGAAAATCAACTGCACCATATTCATCAAGATGCTGTTGATCGAAGGAGACGATTTAAGAACAGAGAACCTGTCAAGTTTGAGCCTTTTGGTGGGGTTGTTGAGAATGGTGAAGGATCAGAGACACCCGAATGGAGTAACTGCCGGACTCTGTTTACTCCGATCACTCTGTTCCAACGAACACATCAGAAAGCAACTCGTAAGCATCGGCGCCGTCGCAAAACTCGGCGGCGCCCTCTCGAATTTGAACGCCAATGGCTTGGAATCGGCGCTTTATATCCTGAACGTTTTGTCGTCCCTTCCAGAGGGAAGATTGGCGTTGAAAGATTGCGAAGATGGGATTAAGAATTTGGTGAAATTGTTGATGAGGGTATCGGAGATTTGTACTGAATTTGCGTTGTCGATTTTGTGGGCGGTGTTCAAGCTTGCGCCGGAGGAATGTGCGGTGCTTGCGGTGGAGGCGGGACTGGCGGCGAAGCTGCTGCTTGTGATACAGAGTGGCTGTAAGAAAGAGCTAAAACAGAGATCTTCTGAGCTATTGAAATTGTGTAGTTTAAATTACCCTGATTCCATCTTCATTTCTAAATGTAAGCTTACCAGAACTATACAATAA 1317 48.44 MLVLSCGAQILDLETVVKDGILGGGGAALISGGGAEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERCNIQKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSGKKMVVDNGGVGLISSLLGSFTSHAVGSEAVGILVNLDLDSDLKKNLIQPTTISLIADILNEGSIETKINCTIFIKMLLIEGDDLRTENLSSLSLLVGLLRMVKDQRHPNGVTAGLCLLRSLCSNEHIRKQLVSIGAVAKLGGALSNLNANGLESALYILNVLSSLPEGRLALKDCEDGIKNLVKLLMRVSEICTEFALSILWAVFKLAPEECAVLAVEAGLAAKLLLVIQSGCKKELKQRSSELLKLCSLNYPDSIFISKCKLTRTIQ 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22329183 22331378 - Sed0007990.1 Sed11g0913 729559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0913 438 Gene3D - 126 435 IPR011989 -
Sed11g0913 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 125 IPR013083 -
Sed11g0913 438 SMART Ubox_2 56 119 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed11g0913 438 CDD RING-Ubox_PUB 54 106 IPR045210 -
Sed11g0913 438 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed11g0913 438 Pfam U-box domain 53 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed11g0913 438 PANTHER WDSAM1 PROTEIN 49 431 IPR045185 GO:0061630(InterPro)
Sed11g0913 438 SUPERFAMILY ARM repeat 128 423 IPR016024 -
Sed11g0913 438 SUPERFAMILY RING/U-box 49 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2733 Sed-Chr1:22000313 Sed11g0913 Sed-Chr11:22329183 4.00E-154 dispersed
Sed11g0913 Sed-Chr11:22329183 Sed13g0489 Sed-Chr13:3337258 1.50E-31 dispersed
Sed11g0913 Sed-Chr11:22329183 Sed13g1818 Sed-Chr13:23145379 1.90E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0913 - - - 0.0