Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0934 ATGGGATTAAGTATGAAGGTTCATCAGTTGGCACGTGCCTTTTGGGACGAACAACCCTCTCTCTCCCTTGGTTGCAAGCGCCTACGCCCTCTTGCTCCAAAGCTCAACCACCAACAACATCCCCTCTCCGACTCGACCTCGCCTACCACGACGCTCACCTCTTTAGACCTTAAAACCTTCATCCGACCCGATTGCGGCCCGAGAAAACCCGGATCCAATCACCATAGCAAAGATTCTTCTTCACCCCAGGCGGTAGAGATGCACCCCGGGGGCACGCGGTGGAATCCAACGCAAGAACAGATAGGGATATTGGAAATGCTTTATAGGAGAGGAATGAGGACTCCGAATGCACAACAGATTGAACACATCACTACCCAGCTTGGCAAGTATGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAATCACAAAGCACGAGAGCGACAAAAGCAGAAGCGCAACAGTCTCGGTCTCGCTCACTCCCCCAGAACTCCCTCCCCTCCCATTATTCCCTTTTTCGACCCTTCGGATGGGGAAGTTAGTCTGTGCAAGAGGAAGTGCATGAACTGGGAGTTTGAGTGTTTGGTAGAGGGTGATAGGACTCTGGAATTATTCCCCTTGCACCCGGAAGGCAGATGA 645 51.32 MGLSMKVHQLARAFWDEQPSLSLGCKRLRPLAPKLNHQQHPLSDSTSPTTTLTSLDLKTFIRPDCGPRKPGSNHHSKDSSSPQAVEMHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEHITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPSPPIIPFFDPSDGEVSLCKRKCMNWEFECLVEGDRTLELFPLHPEGR 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23538013 23539969 + Sed0017667.1 Sed11g0934 729580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0934 214 SMART HOX_1 89 156 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 CDD homeodomain 92 153 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 214 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Sed11g0934 214 FunFam WUSCHEL-related homeobox 4 91 158 - -
Sed11g0934 214 SUPERFAMILY Homeodomain-like 86 157 IPR009057 -
Sed11g0934 214 ProSiteProfiles 'Homeobox' domain profile. 87 152 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 Pfam Homeodomain 92 151 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 Gene3D - 91 158 - -
Sed11g0934 214 MobiDBLite consensus disorder prediction 150 172 - -
Sed11g0934 214 MobiDBLite consensus disorder prediction 63 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0934 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1765 Sed-Chr1:12883188 Sed11g0934 Sed-Chr11:23538013 2.70E-23 dispersed
Sed11g0934 Sed-Chr11:23538013 Sed13g1379 Sed-Chr13:19254980 3.80E-25 dispersed
Sed10g1226 Sed-Chr10:26171404 Sed11g0934 Sed-Chr11:23538013 3.20E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39933 PF00046 Homeodomain 7.20E-19 CL0123 Sed TF