Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0934 ATGGGATTAAGTATGAAGGTTCATCAGTTGGCACGTGCCTTTTGGGACGAACAACCCTCTCTCTCCCTTGGTTGCAAGCGCCTACGCCCTCTTGCTCCAAAGCTCAACCACCAACAACATCCCCTCTCCGACTCGACCTCGCCTACCACGACGCTCACCTCTTTAGACCTTAAAACCTTCATCCGACCCGATTGCGGCCCGAGAAAACCCGGATCCAATCACCATAGCAAAGATTCTTCTTCACCCCAGGCGGTAGAGATGCACCCCGGGGGCACGCGGTGGAATCCAACGCAAGAACAGATAGGGATATTGGAAATGCTTTATAGGAGAGGAATGAGGACTCCGAATGCACAACAGATTGAACACATCACTACCCAGCTTGGCAAGTATGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAATCACAAAGCACGAGAGCGACAAAAGCAGAAGCGCAACAGTCTCGGTCTCGCTCACTCCCCCAGAACTCCCTCCCCTCCCATTATTCCCTTTTTCGACCCTTCGGATGGGGAAGTTAGTCTGTGCAAGAGGAAGTGCATGAACTGGGAGTTTGAGTGTTTGGTAGAGGGTGATAGGACTCTGGAATTATTCCCCTTGCACCCGGAAGGCAGATGA 645 51.32 MGLSMKVHQLARAFWDEQPSLSLGCKRLRPLAPKLNHQQHPLSDSTSPTTTLTSLDLKTFIRPDCGPRKPGSNHHSKDSSSPQAVEMHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEHITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPSPPIIPFFDPSDGEVSLCKRKCMNWEFECLVEGDRTLELFPLHPEGR 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23538013 23539969 + Sed0017667.1 Sed11g0934 729580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0934 214 SMART HOX_1 89 156 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 CDD homeodomain 92 153 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 214 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Sed11g0934 214 FunFam WUSCHEL-related homeobox 4 91 158 - -
Sed11g0934 214 SUPERFAMILY Homeodomain-like 86 157 IPR009057 -
Sed11g0934 214 ProSiteProfiles 'Homeobox' domain profile. 87 152 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 Pfam Homeodomain 92 151 IPR001356 GO:0003677(InterPro)
Sed11g0934 214 Gene3D - 91 158 - -
Sed11g0934 214 MobiDBLite consensus disorder prediction 150 172 - -
Sed11g0934 214 MobiDBLite consensus disorder prediction 63 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1765 Sed-Chr1:12883188 Sed11g0934 Sed-Chr11:23538013 2.70E-23 dispersed
Sed11g0934 Sed-Chr11:23538013 Sed13g1379 Sed-Chr13:19254980 3.80E-25 dispersed
Sed10g1226 Sed-Chr10:26171404 Sed11g0934 Sed-Chr11:23538013 3.20E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39933 PF00046 Homeodomain 7.20E-19 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0934 - - - 0.0