Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0939 ATGTCTAATTATGCCTTGTTGAATGATGAGCTTTCGAAGAGGACCTCCATTTTTGGTTTGCGCTTGTGGGTCGTTCTCGGAATTTGCGTCGGTGCCGCCATTGTTATGGTGTTGTTCCTCATTTCGTTGTGGTTCACTTCAAAGCGCAACAACGCGTCTAAATCTAAACCCTGTTCGAACCCCATCATCCCAAATGTCTCCAAAGAAATCCAGGAAATACGAATCGACCATTCGGACCCAAAAGCTCAATTGGGTTCTAACCCTGAGCCCTTGCCGGAGGCAGAGTCCTTAGCCACGCTGCTTCAGACGGAAGAGGAGGGCCCAGGTAGTGGACGCCATAAAAATGGCATTGAAGTGGGGAAGAGAGGCGGTGGTTCGGGCCATGGTAGCGAAGAGGCTCTGTCGGGCGAGCCGGTGCCGGTGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGGCATTGGTATACTCTGAGAGAGCTTGAGTATTCTTGTAATGGCTTTGCTGATGAGAATGTAATTGGTGAGGGCGGGTATGGTATTGTGTACCGTGGTGTTCTGGCGGATAACACTGTGGTAGCTATAAAAAATCTTCTCAATAACAGGGGGCAGGCAGAGAGGGAATTTAAGGTTGAAGTGGAAGCAATTGGACGGGTTCGACACAAGAATTTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCATAGGATGCTGGTTTATGAGTTCGTTGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGGCCTTGTAGTCCTCTCACATGGGACATTCGAATGAGTATAATTGTTGGAACAGCGAAAGGGTTAACGTACCTCCACGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCGAGTAACATTTTGATTGACAAGCAGTGGAATCCAAAGATCTCCGACTTTGGCCTGGCAAAGCTTCTTGGATCAGAGAGGAGTTATGTGACAACTCGTGTGATGGGTACATTTGGATATGTAGCTCCAGAATATGCTAGCACTGGCATGTTGACTGAAAAAAGTGATGTATATAGTTTTGGCATTCTCATTATGGAGATAATTTCAGGGAGAAACCCAGTCGACTACAGCCGCCCTTCGGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTCAGTAATCAAAATGCAGAGGGAGTTCTGGATCCAAAGTTGCTCGAGAAGCCTTCAACAAGGGTGCTTAAGCGCGCTCTGTTAGTAGCTTTACGGTGTGTGGATCCTAGTGTTCAAAAGAGGCCTAAAATGGGCCATGTAATTCATATGCTTGAAGCTGATGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGGGAGCCAGGGCGATCGCTGCTTAAGGAAAAGCTCATGGAAAGGCTCGTGAGTGAATCTGGAGACAGCAGTGGATATGAAAGTGGAGCGACTCAAGCAAGTCTACATCTATGTAGAAAGCAAGAACATGAAGAACAACAGCCTCGCGAACCTCACACGTTAAGGTGA 1524 47.83 MSNYALLNDELSKRTSIFGLRLWVVLGICVGAAIVMVLFLISLWFTSKRNNASKSKPCSNPIIPNVSKEIQEIRIDHSDPKAQLGSNPEPLPEAESLATLLQTEEEGPGSGRHKNGIEVGKRGGGSGHGSEEALSGEPVPVAVPEVSHLGWGHWYTLRELEYSCNGFADENVIGEGGYGIVYRGVLADNTVVAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGEVGPCSPLTWDIRMSIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILIDKQWNPKISDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLTEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNQNAEGVLDPKLLEKPSTRVLKRALLVALRCVDPSVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGDSSGYESGATQASLHLCRKQEHEEQQPREPHTLR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23742419 23744735 + Sed0012796.1 Sed11g0939 729585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0939 507 MobiDBLite consensus disorder prediction 468 507 - -
Sed11g0939 507 FunFam Putative receptor-like serine/threonine-protein kinase 243 453 - -
Sed11g0939 507 ProSiteProfiles Protein kinase domain profile. 167 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0939 507 MobiDBLite consensus disorder prediction 103 137 - -
Sed11g0939 507 MobiDBLite consensus disorder prediction 489 507 - -
Sed11g0939 507 Pfam Protein kinase domain 169 435 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0939 507 ProSitePatterns Protein kinases ATP-binding region signature. 173 195 IPR017441 GO:0005524(InterPro)
Sed11g0939 507 FunFam Probable serine/threonine-protein kinase At1g01540 147 242 - -
Sed11g0939 507 PANTHER OS01G0323000 PROTEIN 6 476 IPR052232 -
Sed11g0939 507 Gene3D Phosphorylase Kinase; domain 1 147 242 - -
Sed11g0939 507 SUPERFAMILY Protein kinase-like (PK-like) 148 439 IPR011009 -
Sed11g0939 507 SMART serkin_6 167 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g0939 507 CDD STKc_IRAK 173 439 - -
Sed11g0939 507 Gene3D Transferase(Phosphotransferase) domain 1 243 449 - -
Sed11g0939 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g0939 507 MobiDBLite consensus disorder prediction 473 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0939 Sed-Chr11:23742419 Sed12g0162 Sed-Chr12:927919 5.60E-160 dispersed
Sed10g1235 Sed-Chr10:26440288 Sed11g0939 Sed-Chr11:23742419 7.00E-243 wgd
Sed10g0650 Sed-Chr10:4431141 Sed11g0939 Sed-Chr11:23742419 6.80E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79901 PF00069 Pkinase 3.70E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0939 - - - 0.0