Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0939 | ATGTCTAATTATGCCTTGTTGAATGATGAGCTTTCGAAGAGGACCTCCATTTTTGGTTTGCGCTTGTGGGTCGTTCTCGGAATTTGCGTCGGTGCCGCCATTGTTATGGTGTTGTTCCTCATTTCGTTGTGGTTCACTTCAAAGCGCAACAACGCGTCTAAATCTAAACCCTGTTCGAACCCCATCATCCCAAATGTCTCCAAAGAAATCCAGGAAATACGAATCGACCATTCGGACCCAAAAGCTCAATTGGGTTCTAACCCTGAGCCCTTGCCGGAGGCAGAGTCCTTAGCCACGCTGCTTCAGACGGAAGAGGAGGGCCCAGGTAGTGGACGCCATAAAAATGGCATTGAAGTGGGGAAGAGAGGCGGTGGTTCGGGCCATGGTAGCGAAGAGGCTCTGTCGGGCGAGCCGGTGCCGGTGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGGCATTGGTATACTCTGAGAGAGCTTGAGTATTCTTGTAATGGCTTTGCTGATGAGAATGTAATTGGTGAGGGCGGGTATGGTATTGTGTACCGTGGTGTTCTGGCGGATAACACTGTGGTAGCTATAAAAAATCTTCTCAATAACAGGGGGCAGGCAGAGAGGGAATTTAAGGTTGAAGTGGAAGCAATTGGACGGGTTCGACACAAGAATTTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCATAGGATGCTGGTTTATGAGTTCGTTGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGGCCTTGTAGTCCTCTCACATGGGACATTCGAATGAGTATAATTGTTGGAACAGCGAAAGGGTTAACGTACCTCCACGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCGAGTAACATTTTGATTGACAAGCAGTGGAATCCAAAGATCTCCGACTTTGGCCTGGCAAAGCTTCTTGGATCAGAGAGGAGTTATGTGACAACTCGTGTGATGGGTACATTTGGATATGTAGCTCCAGAATATGCTAGCACTGGCATGTTGACTGAAAAAAGTGATGTATATAGTTTTGGCATTCTCATTATGGAGATAATTTCAGGGAGAAACCCAGTCGACTACAGCCGCCCTTCGGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTCAGTAATCAAAATGCAGAGGGAGTTCTGGATCCAAAGTTGCTCGAGAAGCCTTCAACAAGGGTGCTTAAGCGCGCTCTGTTAGTAGCTTTACGGTGTGTGGATCCTAGTGTTCAAAAGAGGCCTAAAATGGGCCATGTAATTCATATGCTTGAAGCTGATGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGGGAGCCAGGGCGATCGCTGCTTAAGGAAAAGCTCATGGAAAGGCTCGTGAGTGAATCTGGAGACAGCAGTGGATATGAAAGTGGAGCGACTCAAGCAAGTCTACATCTATGTAGAAAGCAAGAACATGAAGAACAACAGCCTCGCGAACCTCACACGTTAAGGTGA | 1524 | 47.83 | MSNYALLNDELSKRTSIFGLRLWVVLGICVGAAIVMVLFLISLWFTSKRNNASKSKPCSNPIIPNVSKEIQEIRIDHSDPKAQLGSNPEPLPEAESLATLLQTEEEGPGSGRHKNGIEVGKRGGGSGHGSEEALSGEPVPVAVPEVSHLGWGHWYTLRELEYSCNGFADENVIGEGGYGIVYRGVLADNTVVAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGEVGPCSPLTWDIRMSIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILIDKQWNPKISDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLTEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNQNAEGVLDPKLLEKPSTRVLKRALLVALRCVDPSVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGDSSGYESGATQASLHLCRKQEHEEQQPREPHTLR | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23742419 | 23744735 | + | Sed0012796.1 | Sed11g0939 | 729585 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0939 | 507 | MobiDBLite | consensus disorder prediction | 468 | 507 | - | - | |
Sed11g0939 | 507 | FunFam | Putative receptor-like serine/threonine-protein kinase | 243 | 453 | - | - | |
Sed11g0939 | 507 | ProSiteProfiles | Protein kinase domain profile. | 167 | 425 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0939 | 507 | MobiDBLite | consensus disorder prediction | 103 | 137 | - | - | |
Sed11g0939 | 507 | MobiDBLite | consensus disorder prediction | 489 | 507 | - | - | |
Sed11g0939 | 507 | Pfam | Protein kinase domain | 169 | 435 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0939 | 507 | ProSitePatterns | Protein kinases ATP-binding region signature. | 173 | 195 | IPR017441 | GO:0005524(InterPro) | |
Sed11g0939 | 507 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 147 | 242 | - | - | |
Sed11g0939 | 507 | PANTHER | OS01G0323000 PROTEIN | 6 | 476 | IPR052232 | - | |
Sed11g0939 | 507 | Gene3D | Phosphorylase Kinase; domain 1 | 147 | 242 | - | - | |
Sed11g0939 | 507 | SUPERFAMILY | Protein kinase-like (PK-like) | 148 | 439 | IPR011009 | - | |
Sed11g0939 | 507 | SMART | serkin_6 | 167 | 445 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g0939 | 507 | CDD | STKc_IRAK | 173 | 439 | - | - | |
Sed11g0939 | 507 | Gene3D | Transferase(Phosphotransferase) domain 1 | 243 | 449 | - | - | |
Sed11g0939 | 507 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 289 | 301 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g0939 | 507 | MobiDBLite | consensus disorder prediction | 473 | 487 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0939 | Sed-Chr11:23742419 | Sed12g0162 | Sed-Chr12:927919 | 5.60E-160 | dispersed | |
Sed10g1235 | Sed-Chr10:26440288 | Sed11g0939 | Sed-Chr11:23742419 | 7.00E-243 | wgd | |
Sed10g0650 | Sed-Chr10:4431141 | Sed11g0939 | Sed-Chr11:23742419 | 6.80E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79901 | PF00069 | Pkinase | 3.70E-47 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0939 | - | - | - | 0.0 |