Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0943 ATGAATTTCAAGGATTTTGGGAGCGACCCATCAGCCGGAAACGGCGGAGGAGGTGGACGAGCTCCGGCGAACTCGCCATTAGCACGGCAGTCGTCGATCTACTCGCTGACCTTTGATGAATTTCAGAGTATGGGGAGTATTGGGAAGGATTTGGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGTGCTGAAGAAACGCAAACCATGGCTTCTTCTACTTCTGCTAAAGAAGTGGCTGCTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACACTGCCTAGGACACTTAGTTTGAAGAAAGTGGATGAGGTTTGGAAGGACATAGTCAATGAACATGTTGGTGCTAAAAATGAGAGTAATGTTGGTTCTAGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAGGAGTTTTTGTTTAGAGCTGGTGTTGTGAGAGAGGATTCTCAGTTGCCTGCAAATCCAAACAATGGAGGATTCTTTGGACATAATGCTGGTTTTGGAATTGGTTTTCAGCGGCAGGGGAAACTTCCGGAGAATAACAATCACATACCGATTCAATCGTCGAACTTATCGCTGAGTGTCAATGGTGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAACCTACTATGACATATGGATCTCAGTTGCCTTTACCTAGTGATGGTCAGCTGCTGGCTAGTCCCGGAATTAGAGGTGGGGTTATCGGGATTTCGGATCAAGGGCTGGGTACAAATTTGATGCAAGCTTCTGCATTACATGGTGGAAGGATGGGAGTGGTTAGCTTAGCACCTGGGCCAATACCGGTTGCGACAGGATCACCAGCGAACCAACTATCGTCTGATGGGATTGGAAAGAGCAGTGGCAATACCTCGTCTGTTTCTCCTGTGCCTTACGCGCTTAATGGAGTGCGGGGGAGGAGAAGTAATGGGATTGTGGAGAAGGTTGTCGAAAGGAGGCAGCGGAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCACGGGCTCGAAAGCAGGCTCACACAATGGAATTGGAAGCAGAAGTTGAAAAGCTAAAAAAGGAAAACCATGAACTCCGGAAAAAACAGGCAGAAATCTTGGAGATGCAGAAGGACCGGGCATTGGAAGTAATGGATAAGCATCACGGAATCAAGAAGCGATGCTTAAGACGTACGCAGAGTATGTAG 1215 47.24 MNFKDFGSDPSAGNGGGGGRAPANSPLARQSSIYSLTFDEFQSMGSIGKDLGSMNMDELLKNIWSAEETQTMASSTSAKEVAAGSGGYLQRQGSLTLPRTLSLKKVDEVWKDIVNEHVGAKNESNVGSSLQQRQQTLGEMTLEEFLFRAGVVREDSQLPANPNNGGFFGHNAGFGIGFQRQGKLPENNNHIPIQSSNLSLSVNGVRAHQPQPIFPKQPTMTYGSQLPLPSDGQLLASPGIRGGVIGISDQGLGTNLMQASALHGGRMGVVSLAPGPIPVATGSPANQLSSDGIGKSSGNTSSVSPVPYALNGVRGRRSNGIVEKVVERRQRRMIKNRESAARSRARKQAHTMELEAEVEKLKKENHELRKKQAEILEMQKDRALEVMDKHHGIKKRCLRRTQSM 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23811673 23815676 - Sed0000327.1 Sed11g0943 729589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0943 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 331 346 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0943 404 MobiDBLite consensus disorder prediction 1 26 - -
Sed11g0943 404 SMART brlzneu 324 389 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0943 404 SUPERFAMILY Leucine zipper domain 328 375 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0943 404 MobiDBLite consensus disorder prediction 292 311 - -
Sed11g0943 404 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 401 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Sed11g0943 404 Coils Coil 344 381 - -
Sed11g0943 404 Pfam bZIP transcription factor 328 377 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0943 404 CDD bZIP_plant_BZIP46 328 381 - -
Sed11g0943 404 Gene3D - 326 382 - -
Sed11g0943 404 FunFam BZIP transcription factor 326 377 - -
Sed11g0943 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 326 375 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0943 404 MobiDBLite consensus disorder prediction 292 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0943 Sed-Chr11:23811673 Sed11g0945 Sed-Chr11:23811673 7.00E-222 dispersed
Sed11g0943 Sed-Chr11:23811673 Sed11g0944 Sed-Chr11:23811673 5.00E-204 tandem
Sed10g2023 Sed-Chr10:36798272 Sed11g0943 Sed-Chr11:23811673 6.90E-84 transposed
Sed10g1248 Sed-Chr10:26918304 Sed11g0943 Sed-Chr11:23811673 4.40E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39934 PF00170 bZIP_1 2.30E-12 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0943 K14432 - csv:101223043 606.29