Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0943 | ATGAATTTCAAGGATTTTGGGAGCGACCCATCAGCCGGAAACGGCGGAGGAGGTGGACGAGCTCCGGCGAACTCGCCATTAGCACGGCAGTCGTCGATCTACTCGCTGACCTTTGATGAATTTCAGAGTATGGGGAGTATTGGGAAGGATTTGGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGTGCTGAAGAAACGCAAACCATGGCTTCTTCTACTTCTGCTAAAGAAGTGGCTGCTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACACTGCCTAGGACACTTAGTTTGAAGAAAGTGGATGAGGTTTGGAAGGACATAGTCAATGAACATGTTGGTGCTAAAAATGAGAGTAATGTTGGTTCTAGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAGGAGTTTTTGTTTAGAGCTGGTGTTGTGAGAGAGGATTCTCAGTTGCCTGCAAATCCAAACAATGGAGGATTCTTTGGACATAATGCTGGTTTTGGAATTGGTTTTCAGCGGCAGGGGAAACTTCCGGAGAATAACAATCACATACCGATTCAATCGTCGAACTTATCGCTGAGTGTCAATGGTGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAACCTACTATGACATATGGATCTCAGTTGCCTTTACCTAGTGATGGTCAGCTGCTGGCTAGTCCCGGAATTAGAGGTGGGGTTATCGGGATTTCGGATCAAGGGCTGGGTACAAATTTGATGCAAGCTTCTGCATTACATGGTGGAAGGATGGGAGTGGTTAGCTTAGCACCTGGGCCAATACCGGTTGCGACAGGATCACCAGCGAACCAACTATCGTCTGATGGGATTGGAAAGAGCAGTGGCAATACCTCGTCTGTTTCTCCTGTGCCTTACGCGCTTAATGGAGTGCGGGGGAGGAGAAGTAATGGGATTGTGGAGAAGGTTGTCGAAAGGAGGCAGCGGAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCACGGGCTCGAAAGCAGGCTCACACAATGGAATTGGAAGCAGAAGTTGAAAAGCTAAAAAAGGAAAACCATGAACTCCGGAAAAAACAGGCAGAAATCTTGGAGATGCAGAAGGACCGGGCATTGGAAGTAATGGATAAGCATCACGGAATCAAGAAGCGATGCTTAAGACGTACGCAGAGTATGTAG | 1215 | 47.24 | MNFKDFGSDPSAGNGGGGGRAPANSPLARQSSIYSLTFDEFQSMGSIGKDLGSMNMDELLKNIWSAEETQTMASSTSAKEVAAGSGGYLQRQGSLTLPRTLSLKKVDEVWKDIVNEHVGAKNESNVGSSLQQRQQTLGEMTLEEFLFRAGVVREDSQLPANPNNGGFFGHNAGFGIGFQRQGKLPENNNHIPIQSSNLSLSVNGVRAHQPQPIFPKQPTMTYGSQLPLPSDGQLLASPGIRGGVIGISDQGLGTNLMQASALHGGRMGVVSLAPGPIPVATGSPANQLSSDGIGKSSGNTSSVSPVPYALNGVRGRRSNGIVEKVVERRQRRMIKNRESAARSRARKQAHTMELEAEVEKLKKENHELRKKQAEILEMQKDRALEVMDKHHGIKKRCLRRTQSM | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23811673 | 23815676 | - | Sed0000327.1 | Sed11g0943 | 729589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0943 | 404 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 331 | 346 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0943 | 404 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed11g0943 | 404 | SMART | brlzneu | 324 | 389 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0943 | 404 | SUPERFAMILY | Leucine zipper domain | 328 | 375 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0943 | 404 | MobiDBLite | consensus disorder prediction | 292 | 311 | - | - | |
Sed11g0943 | 404 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 29 | 401 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
Sed11g0943 | 404 | Coils | Coil | 344 | 381 | - | - | |
Sed11g0943 | 404 | Pfam | bZIP transcription factor | 328 | 377 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0943 | 404 | CDD | bZIP_plant_BZIP46 | 328 | 381 | - | - | |
Sed11g0943 | 404 | Gene3D | - | 326 | 382 | - | - | |
Sed11g0943 | 404 | FunFam | BZIP transcription factor | 326 | 377 | - | - | |
Sed11g0943 | 404 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 326 | 375 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0943 | 404 | MobiDBLite | consensus disorder prediction | 292 | 307 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0943 | Sed-Chr11:23811673 | Sed11g0945 | Sed-Chr11:23811673 | 7.00E-222 | dispersed | |
Sed11g0943 | Sed-Chr11:23811673 | Sed11g0944 | Sed-Chr11:23811673 | 5.00E-204 | tandem | |
Sed10g2023 | Sed-Chr10:36798272 | Sed11g0943 | Sed-Chr11:23811673 | 6.90E-84 | transposed | |
Sed10g1248 | Sed-Chr10:26918304 | Sed11g0943 | Sed-Chr11:23811673 | 4.40E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39934 | PF00170 | bZIP_1 | 2.30E-12 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0943 | K14432 | - | csv:101223043 | 606.29 |