Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g0944 | ATGAATTTCAAGGATTTTGGGAGCGACCCATCAGCCGGAAACGGCGGAGGAGGTGGACGAGCTCCGGCGAACTCGCCATTAGCACGGCAGTCGTCGATCTACTCGCTGACCTTTGATGAATTTCAGAGTATGGGGAGTATTGGGAAGGATTTGGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGTGCTGAAGAAACGCAAACCATGGCTTCTTCTACTTCTGCTAAAGAAGTGGCTGCTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACACTGCCTAGGACACTTAGTTTGAAGAAAGTGGATGAGGTTTGGAAGGACATAGTCAATGAACATGTTGGTGCTAAAAATGAGAGTAATGTTGGTTCTAGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAGGAGTTTTTGTTTAGAGCTGGTGTTGTGAGAGAGGATTCTCAGTTGCCTGCAAATCCAAACAATGGAGGATTCTTTGGACATAATGCTGGTTTTGGAATTGGTTTTCAGCGGCAGGGGAAACTTCCGGAGAATAACAATCACATACCGATTCAATCGTCGAACTTATCGCTGAGTGTCAATGGTGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAACCTACTATGACATATGGATCTCAGTTGCCTTTACCTAGTGATGGTCAGCTGCTGGCTAGTCCCGGAATTAGAGGTGGGGTTATCGGGATTTCGGATCAAGGGCTGGGTACAAATTTGATGCAAGCTTCTGCATTACATGGTGGAAGGATGGGAGTGGTTAGCTTAGCACCTGGGCCAATACCGGTTGCGACAGGATCACCAGCGAACCAACTATCGTCTGATGGGATTGGAAAGAGCAGTGGCAATACCTCGTCTGTTTCTCCTGTGCCTTACGCGCTTAATGGAGTGCGGGGGAGGAGAAGTAATGGGATTGTGGAGAAGGTTGTCGAAAGGAGGCAGCGGAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCACGGGCTCGAAAGCAGGCTCACACAATGGAATTGGAAGCAGAAGTTGAAAAGCTAAAAAAGGAAAACCATGAACTCCGGAAAAAACAGGTAAATAAGTGA | 1128 | 47.07 | MNFKDFGSDPSAGNGGGGGRAPANSPLARQSSIYSLTFDEFQSMGSIGKDLGSMNMDELLKNIWSAEETQTMASSTSAKEVAAGSGGYLQRQGSLTLPRTLSLKKVDEVWKDIVNEHVGAKNESNVGSSLQQRQQTLGEMTLEEFLFRAGVVREDSQLPANPNNGGFFGHNAGFGIGFQRQGKLPENNNHIPIQSSNLSLSVNGVRAHQPQPIFPKQPTMTYGSQLPLPSDGQLLASPGIRGGVIGISDQGLGTNLMQASALHGGRMGVVSLAPGPIPVATGSPANQLSSDGIGKSSGNTSSVSPVPYALNGVRGRRSNGIVEKVVERRQRRMIKNRESAARSRARKQAHTMELEAEVEKLKKENHELRKKQVNK | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23811673 | 23815676 | - | Sed0000327.2 | Sed11g0944 | 729590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g0944 | 375 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 331 | 346 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0944 | 375 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed11g0944 | 375 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 326 | 371 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0944 | 375 | CDD | bZIP_plant_BZIP46 | 328 | 373 | - | - | |
Sed11g0944 | 375 | SMART | brlzneu | 324 | 375 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0944 | 375 | Pfam | bZIP transcription factor | 328 | 371 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0944 | 375 | Coils | Coil | 344 | 374 | - | - | |
Sed11g0944 | 375 | FunFam | BZIP transcription factor | 326 | 375 | - | - | |
Sed11g0944 | 375 | Gene3D | - | 326 | 375 | - | - | |
Sed11g0944 | 375 | SUPERFAMILY | Leucine zipper domain | 328 | 371 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g0944 | 375 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 29 | 372 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0944 | Sed-Chr11:23811673 | Sed11g0946 | Sed-Chr11:23811673 | 2.50E-205 | dispersed | |
Sed11g0943 | Sed-Chr11:23811673 | Sed11g0944 | Sed-Chr11:23811673 | 5.00E-204 | tandem | |
Sed11g0944 | Sed-Chr11:23811673 | Sed11g0945 | Sed-Chr11:23811673 | 7.90E-204 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39935 | PF00170 | bZIP_1 | 3.40E-12 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g0944 | K14432 | - | csv:101223043 | 555.058 |