Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0946 ATGAATTTCAAGGATTTTGGGAGCGACCCATCAGCCGGAAACGGCGGAGGAGGTGGACGAGCTCCGGCGAACTCGCCATTAGCACGGCAGTCGTCGATCTACTCGCTGACCTTTGATGAATTTCAGAGTATGGGGAGTATTGGGAAGGATTTGGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGTGCTGAAGAAACGCAAACCATGGCTTCTTCTACTTCTGCTAAAGAAGTGGCTGCTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACACTGCCTAGGACACTTAGTTTGAAGAAAGTGGATGAGGTTTGGAAGGACATAGTCAATGAACATGTTGGTGCTAAAAATGAGAGTAATGTTGGTTCTAGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAGGAGTTTTTGTTTAGAGCTGGTGTTGTGAGAGAGGATTCTCAGTTGCCTGCAAATCCAAACAATGGAGGATTCTTTGGACATAATGCTGGTTTTGGAATTGGTTTTCAGCGGCAGGGGAAACTTCCGGAGAATAACAATCACATACCGATTCAATCGTCGAACTTATCGCTGAGTGTCAATGGTGTTAGAGCACATCAGCCGCAGCCAATATTTCCAAAGCAACCTACTATGACATATGGATCTCAGTTGCCTTTACCTAGTGATGGTCAGCTGCTGGCTAGTCCCGGAATTAGAGGTGGGGTTATCGGGATTTCGGATCAAGGGCTGGGTACAAATTTGATGCAAGCTTCTGCATTACATGGTGGAAGGATGGGAGTGGTTAGCTTAGCACCTGGGCCAATACCGGTTGCGACAGGATCACCAGCGAACCAACTATCGTCTGATGGGATTGGAAAGAGCAGTGGCAATACCTCGTCTGTTTCTCCTGTGCCTTACGCGCTTAATGGAGTGCGGGGGAGGAGAAGTAATGGGATTGTGGAGAAGGTTGTCGAAAGGAGGCAGCGGAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCACGGGCTCGAAAGCAGGCTCACACAATGGAATTGGAAGCAGAAGTTGAAAAGCTAAAAAAGGAAAACCATGAACTCCGGAAAAAACAGGTAAATAAGTGA 1128 47.07 MNFKDFGSDPSAGNGGGGGRAPANSPLARQSSIYSLTFDEFQSMGSIGKDLGSMNMDELLKNIWSAEETQTMASSTSAKEVAAGSGGYLQRQGSLTLPRTLSLKKVDEVWKDIVNEHVGAKNESNVGSSLQQRQQTLGEMTLEEFLFRAGVVREDSQLPANPNNGGFFGHNAGFGIGFQRQGKLPENNNHIPIQSSNLSLSVNGVRAHQPQPIFPKQPTMTYGSQLPLPSDGQLLASPGIRGGVIGISDQGLGTNLMQASALHGGRMGVVSLAPGPIPVATGSPANQLSSDGIGKSSGNTSSVSPVPYALNGVRGRRSNGIVEKVVERRQRRMIKNRESAARSRARKQAHTMELEAEVEKLKKENHELRKKQVNK 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23811673 23815676 - Sed0000327.4 Sed11g0946 729592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0946 375 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 331 346 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0946 375 MobiDBLite consensus disorder prediction 1 26 - -
Sed11g0946 375 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 326 371 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0946 375 CDD bZIP_plant_BZIP46 328 373 - -
Sed11g0946 375 SMART brlzneu 324 375 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0946 375 Pfam bZIP transcription factor 328 371 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0946 375 Coils Coil 344 374 - -
Sed11g0946 375 FunFam BZIP transcription factor 326 375 - -
Sed11g0946 375 Gene3D - 326 375 - -
Sed11g0946 375 SUPERFAMILY Leucine zipper domain 328 371 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g0946 375 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 372 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0944 Sed-Chr11:23811673 Sed11g0946 Sed-Chr11:23811673 2.50E-205 dispersed
Sed11g0946 Sed-Chr11:23811673 Sed11g1408 Sed-Chr11:30035602 6.80E-30 dispersed
Sed11g0945 Sed-Chr11:23811673 Sed11g0946 Sed-Chr11:23811673 5.00E-204 tandem
Sed11g0946 Sed-Chr11:23811673 Sed11g0947 Sed-Chr11:23811673 2.50E-205 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39937 PF00170 bZIP_1 3.40E-12 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0946 K14432 - csv:101223043 555.058