Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0951 ATGGCGGTTTCACTTTCATCAGTCACTGCCAGAGCCACATCCTTCCATCTCCACCCCTCTTTCCCATCTTCATCCTTCATTTCCAACACCTTTCACATTCCCTCAAAACACTCCTTTCGCTCAACCTCAATAATAGCTCAAGCCCAATCTCCGCCTCGCCAAACATGGCTCCCGGGCCTCGACCCGCCGCCTCATCTCGACGGGACCCTCGCCGGAGATTTCGGGTTCGACCCACTTGGGCTCGGCCAAGACCCGCCCAGCTTGAAGTGGTTCGTCCAAGCCGAGCTCGTCCATTGTCGCTTCGCCATGCTCGGCGTCTCGGGAATTCTTCTCACCGATTTGCTTCGTGTGACAGGAATCAGTGAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTCACCAACAAACAAACGCTCTTCATTGTTCAGCTGCTCTTGATGGGGTTTGTGGAAACCAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAATCAGGAACTTTCTTTGGATTGGAATCTGCTTTCGAAGGTCTCGAACCCGGGTACCCTGGAGGTCCCCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCCCATCAATGGAAGCTCAAGGAGATTAAGAATGGACGCCTTGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCCTATGTGACTCAAACAGGGCCAATAGATAACCTCTTGGAACACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCAAGCTCAAGTCCTTGA 789 51.08 MAVSLSSVTARATSFHLHPSFPSSSFISNTFHIPSKHSFRSTSIIAQAQSPPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGQDPPSLKWFVQAELVHCRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFTNKQTLFIVQLLLMGFVETKRYMDFKSPGSQAQSGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHQWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIIQTLSSSSP 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23937939 23939513 + Sed0028014.1 Sed11g0951 729597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0951 262 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 253 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Sed11g0951 262 FunFam Chlorophyll a-b binding protein, chloroplastic 54 261 - -
Sed11g0951 262 Pfam Chlorophyll A-B binding protein 62 230 IPR022796 -
Sed11g0951 262 Gene3D Chlorophyll a/b binding protein domain 54 261 - -
Sed11g0951 262 SUPERFAMILY Chlorophyll a-b binding protein 51 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1153 Sed-Chr8:22676092 Sed11g0951 Sed-Chr11:23937939 7.80E-44 dispersed
Sed08g1156 Sed-Chr8:22736962 Sed11g0951 Sed-Chr11:23937939 7.80E-44 dispersed
Sed11g0951 Sed-Chr11:23937939 Sed12g1956 Sed-Chr12:30606377 2.00E-52 dispersed
Sed11g0951 Sed-Chr11:23937939 Sed08g2078 Sed-Chr8:34963279 1.10E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0951 K08911 - csv:101219846 396.741