Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0978 ATGTTAACATCTGGCTTGGTTTTCCATCTCCGCTCAACACGTTTCCCCATGGCTTCGGTTTCTCTCTCTTCTCTCTCTCATTCGCCTTCGGTTCTTCTTCTTCCTTATCCGACGACGACTCTGCAACTCCACCGGCGACTCTTTCTTCGCCGTCGAACGCTTTCTTCTTCATCCATCACGTCTTCGTCAATTTCGGCGCCGAAGGTTGTTGTTACCAGAGAGCGCGGCAAGAACGGGAAGCTCGTCAGTGCTCTGGCAAAACATGGAATAAACTGCTTGGAGCTTCCCCTCATTCAACACAGTCAAGGACCTGACTGTAATAGGCTACAGTCTGTACTCAATGATTCTGTATTTGACTGGATTGTTATAACATCCCCTGAAGCTGGCTTGGTGTTTCTAGAGGCATGGAAGGCCGCTGGAATGCCAAAAGTTAGAATAGGTGTTGTGGGAGCTGGTACAGCTAACATTTTCGGGGAGGTTTTGCAATCGTCAAAACAACTACTTGATGTGGCATTTGCACCCTCAAAAGCAATAGGCAAGATCTTGGCTTCCGAGCTTCCGAAGTTAGGGAATTCAAAGTGCAGTGTCTTATATCCTGCTTCTACTAAGGCAGGCAACGATATTGAGGAAGGCCTTTTTAATCGTGGATTTGAGGTCACCAGACTTAATACATACACTACGGCACCTGTGGATTATGTTGATCAATCCATTCTCGAGCAAGCACGTTCATTGCCTGTTGTGACAGTGGCTTCACCTTCTGCAGTTCGTGCATGGGTCAATCTCATTTCAGAGCCAAATGAGTGGGAAAATTCACTTGCCTGTATTGGGGAAACAACTGCAGCGGCAGCAAAAAGATTAGGATTGAAAAACGTTTACCACCCCAAGAACCCAGGCCTGGAAGGGTGGGTTGATAGTATACTGGAAGCTTTAAGATCAGAAGCTCAAGTTGTGTAG 954 46.86 MLTSGLVFHLRSTRFPMASVSLSSLSHSPSVLLLPYPTTTLQLHRRLFLRRRTLSSSSITSSSISAPKVVVTRERGKNGKLVSALAKHGINCLELPLIQHSQGPDCNRLQSVLNDSVFDWIVITSPEAGLVFLEAWKAAGMPKVRIGVVGAGTANIFGEVLQSSKQLLDVAFAPSKAIGKILASELPKLGNSKCSVLYPASTKAGNDIEEGLFNRGFEVTRLNTYTTAPVDYVDQSILEQARSLPVVTVASPSAVRAWVNLISEPNEWENSLACIGETTAAAAKRLGLKNVYHPKNPGLEGWVDSILEALRSEAQVV 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24520139 24529982 + Sed0001510.1 Sed11g0978 729624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0978 317 PANTHER UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC 35 312 IPR039793 GO:0004852(PANTHER)|GO:0004852(InterPro)|GO:0006780(PANTHER)|GO:0006780(InterPro)|GO:0009507(PANTHER)
Sed11g0978 317 CDD HemD 69 306 IPR003754 GO:0004852(InterPro)|GO:0033014(InterPro)
Sed11g0978 317 Gene3D - 192 310 IPR036108 GO:0004852(InterPro)|GO:0033014(InterPro)
Sed11g0978 317 FunFam Uroporphyrinogen-III synthase, chloroplastic 112 219 - -
Sed11g0978 317 Pfam Uroporphyrinogen-III synthase HemD 81 303 IPR003754 GO:0004852(InterPro)|GO:0033014(InterPro)
Sed11g0978 317 SUPERFAMILY HemD-like 67 309 IPR036108 GO:0004852(InterPro)|GO:0033014(InterPro)
Sed11g0978 317 Gene3D - 56 185 IPR036108 GO:0004852(InterPro)|GO:0033014(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0978 K01719 - - csv:101203770 478.789
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g814 . . . . . . . . Cmo05g00204 Cmo12g00458 . . . Car12g00490 Sed11g0978 . Cpe07g00461 Bhi04g00312 Tan02g1896 Cmetu03g2106 . Hepe10g0702 . Lcy13g2032 Cla08g01540 Cam08g2035 Cec08g1611 Cco08g1745 Clacu08g1722 . Cre08g1506 . . Cone17ag1294 Cone20ag0173 . . . Cme03g02007 . . Bda08g01326 . . Bpe05g00063 . Bma05g00096 . . . . Cma05g00204 Car05g00169 . Cpe11g00170 . . . . . . . . . . . . . . . Lsi08g01445 Csa02g01995 Chy03g01512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007939 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35