Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g0992 ATGAAATTTGGCAATTTGTTGACGGACGATGACGGCGATTTTCCGACGCCGAGCAGTACGATTTCCGGCAGCGACGGGTCGCCGATGAGCTTGTCGCCGTGGAATCAGACATTTCCCTTCATGAAATCTCCATGTTTTTCTCGAATACAAAGCCATTCCTTAATTGGGTCTCTTGTACGTGAGGAAGGCCACGTGTACTCGCTGGCCACCGCCGGCGAGCTGCTGTTCACCGGCTCCGACGGCAAAAACATTCGGGTTTGGAAAAATCTCAAGGAATTTTCCGGGTTTAAATCCTGCAGTGGATTGGTAAAAGCCATTGTAATCTCCGGCGAAAAGATCTTCACGGGTCACCAGGATGGAAAAATTCGGGTGTGGAAGAACCAAAGCGGCGGATACCGGCGGGCTGGGACTTTGCCGGCGATGAGAGATGTATTAAGGAGCTCGATTGACCCTCGAAACTACGTCGTTTCGGGACGGAATGGGAGCCGGCTTTGGTTTAAGCATGTGGATGCCGTTTCGTGCTTGAGCTTGAGTGAAGATGGTACCTTATTGTACTCGTGTTCTTGGGATAGAACCTTGAAAGTTTGGAGAGTATCAGATTCCAAATGCCTTGAATCACTTGTTGTCCATGATGATGCTGTGAATGCTGTGGTCGCAGCTTTTGGTGACTTGGTCATCACCGGCTCGGCAGACGGCACAGCTAAGGTTTGGCGGAGGCAGCATGAGGCAAAAAACGACGCAACAAAACACACACTGGAGCAAACGCTGTTAAAGCAAGACAGTGCAGTGACGGCGGTGGCCGTCAACGCCGCCGGCACGGTGGTGTACTGCGGCGCCTCCGACGGAAAAGTCAACTTCTGGGAGAGAGAGAAGCGGCTGACTTACGGCGGCGTTCTCAAGGGCCACAACCTAGCTGTTCTCTGCCTCGCCGCGGCCGGGAACCGGATGGTACTCAGCGGCGCCGCCGATAATGCCATATGCGTGTGGCGGAGGGACGGCCTTTTTCACACGTGCGTGTCGGTGCTGACGGGCCATACCGGGCCCGTGAAGTGCTTGGCCGTGGAGGAAGATCGCCGCCGGCCGTCGGAAAACGGCGGCCGGCGGCGGTGGGTTGCGTATAGCGGCAGCCTTGACAGATCGGTGAAGGTGTGGGAAGTTCCTGACGGCGTCTGA 1173 55.41 MKFGNLLTDDDGDFPTPSSTISGSDGSPMSLSPWNQTFPFMKSPCFSRIQSHSLIGSLVREEGHVYSLATAGELLFTGSDGKNIRVWKNLKEFSGFKSCSGLVKAIVISGEKIFTGHQDGKIRVWKNQSGGYRRAGTLPAMRDVLRSSIDPRNYVVSGRNGSRLWFKHVDAVSCLSLSEDGTLLYSCSWDRTLKVWRVSDSKCLESLVVHDDAVNAVVAAFGDLVITGSADGTAKVWRRQHEAKNDATKHTLEQTLLKQDSAVTAVAVNAAGTVVYCGASDGKVNFWEREKRLTYGGVLKGHNLAVLCLAAAGNRMVLSGAADNAICVWRRDGLFHTCVSVLTGHTGPVKCLAVEEDRRRPSENGGRRRWVAYSGSLDRSVKVWEVPDGV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24942400 24945076 - Sed0006421.1 Sed11g0992 729638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g0992 390 Gene3D - 250 390 IPR015943 GO:0005515(InterPro)
Sed11g0992 390 PRINTS G protein beta WD-40 repeat signature 225 239 IPR020472 -
Sed11g0992 390 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
Sed11g0992 390 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Sed11g0992 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 329 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 SMART WD40_4 89 126 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 SMART WD40_4 51 88 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 SMART WD40_4 249 288 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 SMART WD40_4 292 330 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 SMART WD40_4 335 385 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 SMART WD40_4 159 197 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 SMART WD40_4 200 238 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 386 IPR045182 -
Sed11g0992 390 Gene3D - 155 249 IPR015943 GO:0005515(InterPro)
Sed11g0992 390 Pfam WD domain, G-beta repeat 62 87 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 Pfam WD domain, G-beta repeat 202 237 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 Pfam WD domain, G-beta repeat 337 384 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 Pfam WD domain, G-beta repeat 168 196 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 Pfam WD domain, G-beta repeat 297 329 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 Pfam WD domain, G-beta repeat 255 287 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 237 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 165 202 - -
Sed11g0992 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 288 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515(InterPro)
Sed11g0992 390 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Sed11g0992 390 MobiDBLite consensus disorder prediction 12 28 - -
Sed11g0992 390 MobiDBLite consensus disorder prediction 1 28 - -
Sed11g0992 390 FunFam BnaA09g28200D protein 155 242 - -
Sed11g0992 390 Gene3D - 21 137 IPR015943 GO:0005515(InterPro)
Sed11g0992 390 SUPERFAMILY WD40 repeat-like 53 389 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g0992 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2540 Sed-Chr8:38078366 Sed11g0992 Sed-Chr11:24942400 3.60E-47 dispersed
Sed10g2068 Sed-Chr10:37159376 Sed11g0992 Sed-Chr11:24942400 4.20E-106 dispersed
Sed11g0992 Sed-Chr11:24942400 Sed11g1549 Sed-Chr11:31105399 3.60E-42 dispersed
Sed01g0096 Sed-Chr1:885585 Sed11g0992 Sed-Chr11:24942400 3.60E-109 transposed
Sed01g2613 Sed-Chr1:20011698 Sed11g0992 Sed-Chr11:24942400 1.50E-105 wgd
Sed11g0992 Sed-Chr11:24942400 Sed13g1682 Sed-Chr13:21837622 4.80E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27