Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1002 | ATGGCGAGTGGATTTGGGGAATCGACGAGTAGGCAACCCCAAACCCCTTCCTGTTCCGACAACAATGGCGATGCTAGTAATTTTGAGTGCAATATTTGCCTCGATTTAGCTCAAGACCCTATTGTAACCCTATGCGGTCATCTTTTTTGCTGGCCCTGTCTTTATAAGTGGCTGCACATTCGTTCCCATCCCCATGAATGTCCAGTTTGTAAGGCTGTCATAGAACAGCAAAATTTGGTTCCTTTATACGGCAGGGGAAAGACTTCGACCGACCCGAGATCGAAAAGCATTCCTAGTCGTCCTATGGGGCAGAGACCGGAAGCAGCAGCTCCTCCCCCAGAACCAAACCCTTTTCATCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCCTCGACAAGGTTCGGTAATTTCACATTGTCTGCGGCGGTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGCGCTGGAGTTGGTGCTGGTGCTCGTGCTGGTGCTAACTTTTCATATGGATTTCCGAACATGTTCTACGGTAGCCAAGGCCAGACCCATGGATACTATCACAATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAACAGCTGCTATTGTTTATTGGTTTCTGTGTTCTTCTTGTCGTAATCTGGCAATAG | 702 | 47.72 | MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKSIPSRPMGQRPEAAAPPPEPNPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVGAGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25145519 | 25146905 | - | Sed0010082.1 | Sed11g1002 | 729648 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1002 | 233 | CDD | RING-HC_AtRMA-like | 28 | 72 | - | - | |
Sed11g1002 | 233 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 84 | IPR013083 | - | |
Sed11g1002 | 233 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 221 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Sed11g1002 | 233 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed11g1002 | 233 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 70 | IPR018957 | GO:0046872(InterPro) | |
Sed11g1002 | 233 | SUPERFAMILY | RING/U-box | 26 | 83 | - | - | |
Sed11g1002 | 233 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Sed11g1002 | 233 | SMART | ring_2 | 30 | 70 | IPR001841 | - | |
Sed11g1002 | 233 | MobiDBLite | consensus disorder prediction | 83 | 116 | - | - | |
Sed11g1002 | 233 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0306 | Sed-Chr10:1847380 | Sed11g1002 | Sed-Chr11:25145519 | 4.90E-23 | dispersed | |
Sed10g0427 | Sed-Chr10:2673446 | Sed11g1002 | Sed-Chr11:25145519 | 1.70E-60 | dispersed | |
Sed11g1002 | Sed-Chr11:25145519 | Sed12g1275 | Sed-Chr12:9287199 | 2.30E-23 | dispersed | |
Sed10g1313 | Sed-Chr10:28769847 | Sed11g1002 | Sed-Chr11:25145519 | 2.60E-112 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1002 | K10666 | - | csv:101221027 | 382.489 |