Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1002 ATGGCGAGTGGATTTGGGGAATCGACGAGTAGGCAACCCCAAACCCCTTCCTGTTCCGACAACAATGGCGATGCTAGTAATTTTGAGTGCAATATTTGCCTCGATTTAGCTCAAGACCCTATTGTAACCCTATGCGGTCATCTTTTTTGCTGGCCCTGTCTTTATAAGTGGCTGCACATTCGTTCCCATCCCCATGAATGTCCAGTTTGTAAGGCTGTCATAGAACAGCAAAATTTGGTTCCTTTATACGGCAGGGGAAAGACTTCGACCGACCCGAGATCGAAAAGCATTCCTAGTCGTCCTATGGGGCAGAGACCGGAAGCAGCAGCTCCTCCCCCAGAACCAAACCCTTTTCATCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCCTCGACAAGGTTCGGTAATTTCACATTGTCTGCGGCGGTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGCGCTGGAGTTGGTGCTGGTGCTCGTGCTGGTGCTAACTTTTCATATGGATTTCCGAACATGTTCTACGGTAGCCAAGGCCAGACCCATGGATACTATCACAATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAACAGCTGCTATTGTTTATTGGTTTCTGTGTTCTTCTTGTCGTAATCTGGCAATAG 702 47.72 MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKSIPSRPMGQRPEAAAPPPEPNPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVGAGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25145519 25146905 - Sed0010082.1 Sed11g1002 729648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1002 233 CDD RING-HC_AtRMA-like 28 72 - -
Sed11g1002 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Sed11g1002 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 221 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Sed11g1002 233 MobiDBLite consensus disorder prediction 1 20 - -
Sed11g1002 233 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Sed11g1002 233 SUPERFAMILY RING/U-box 26 83 - -
Sed11g1002 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Sed11g1002 233 SMART ring_2 30 70 IPR001841 -
Sed11g1002 233 MobiDBLite consensus disorder prediction 83 116 - -
Sed11g1002 233 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0306 Sed-Chr10:1847380 Sed11g1002 Sed-Chr11:25145519 4.90E-23 dispersed
Sed10g0427 Sed-Chr10:2673446 Sed11g1002 Sed-Chr11:25145519 1.70E-60 dispersed
Sed11g1002 Sed-Chr11:25145519 Sed12g1275 Sed-Chr12:9287199 2.30E-23 dispersed
Sed10g1313 Sed-Chr10:28769847 Sed11g1002 Sed-Chr11:25145519 2.60E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1002 K10666 - csv:101221027 382.489