Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1026 ATGGCCGCCCGCTTCGACCTCGGTTCCCGCCCTAATCTCTCTGTTTCCAGTCCTCTCCATTCCGCCCATGATGTTCAGGGATCTGAAAATCCTATTCCTCTTTCACCACAGTGGCTTATGCCTAAGCCCGGGGAGAGTAAACTTGGAATTGGAACTGGGGAAAACCACTTCAGTCATCAACCTGCTTATGGAAACCACATGAACATGAAGGGACCAGAGAATTATGAGGATATGAATGACATTCAAAAGAAAAAAGAAGTTTTTAAGCCATCCTTGACTGATTCTGAAACTGGAAGGCGTGACCGTTGGCATGATGAAGAAAGAGAAAACAATTCTTCAATGCGTAAGGATCGTTGGAGGGACAGTGAGAAAGAGGTAGGCGATAGTCGTAAGATGGACCGCTGGACGGAAGACTCATCCACTAGACTCTTTCGAGAATCTCGTCGAGGCCCATCAGAACGTTGGTCTGATTCAAGCAATCGGGATAACGCTCAATATGATCAACGACGTGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAGAGATACTGAAGGCATTCGTGAGAAGAAGGTGGACTTTGGAAGAGATAGTGATTTGCATTTTGATAAAAATTATGGGAAAAATGACCGGGATGGAGAACATTATCGCCCATGGAGGTCTAGTTCCTCTCAAGCTCGAGGTAAGGGAGAACCCCCTCACCTTCAGACCCAAACACCAATCAAACAAGTCCCTGCATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCTTTGGGCCATGGAATCATCAGTTCTGGTGTAAACACTACAAATAGTATTTATTCATCTTCTAATTCCCTTGGAGCTGCTTCTGAGAAATCTGGAAGAGAGCCTTACCACCACAAATATAGCAGGATAAAGTTGCTTGATGTTTTTAGGACTACCAATCTGACATCTCAGCAGACACTAAAAGATGGTTTTGTTCCAGTTCCTACTCTTATGCTGGATGAACCATTGGAGCCTCTTGCTCTTTGTGCGCCAACTGCTGAAGAAATGACCCTCTTGAAGGCGATTGATAAAGGGGAAATTGTTAGTAGTGGTGCACCTCAAGTATCTAAGGATGGTCGAAACACATCAGAATTTATGCAGACAAGGCGTGCAAAACTTGGTATTTCACCTTTCCTAGGGAGTAGAGAGGATTTACCTCATGGCTCTGATGATTACAATGATGATAAAGACGATAGCACCACTAAACCTGGTCACACAAACTATTCAGAGGTCTCTACCGAGAGGCAGGTGCCTTACCATAGGCCCCAGTCTAAAATAGAGACCATTGAGGAACACATGGCACATGCTAGTAGCAAGTTTAAATCTGAAGCTTTCAGAGAAGATGACAATGCTATGAGAAAAGCAGTTGAGGAGCCTGTCAATGTTCATCCTGGCAGTACGTGGGAGGCCTCATCACTTGAGCAATCCTTGAATAAATCCTTGCCGGATTGGAGAGATCATAATAATATTAGCTCTGGAACTCCTGACAAGGGTTGGCTACAGCCTGCAAAGAATCTTAATGGTGGGTGGGGAAGTAATTCTACTACTCTATCTTATCCAAAGGACAACCCCAAATGGCAGACCGCAGAAGAACCTATTATTAGAAGGCAGCTTTCAGGGATTTTGGACAAGGAACAACTAGCAAGGAAAGCTGTTCAATCTGCTCCAGAGGATTTGCAACTTCATTACATTGACCCTAAAGGTGCAATTCAAGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGCTATTTTGGCTTGGATTTACTTGTTCGTCTGGCAAATGCACCAAATGACTTGCCATTTTCAGCACTTGGTGATGTCATGCCTCATTTGCGATCTAAAGCTAAGCCACCACCAGGATTTAGTGGACCAAAGCCAAATGAATTTGCTGATACAGTAGGTAATGCTAGTTATGGTAGCATGGGAAGGCTTCATACTGGTTTGAATGAGATTGATACTTTGAGGAATGAGATAAGGCATAAACATGGCTCAACGGTGGAAGCTGAAAACAGATTCTTGGAGTCACTTATGTCTAGTAATATAGCTTCACCTCTCGAGAAGAGTGCCTTTTCTGAAGGTATGGCGGGGTATTTTGGAAACAATTGTAATAATTTGTCTTCCTTGGGAATAGACAATGGAAGCAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAACGACAAAGGTCGTTGACTAACCCTCATGCGTTTTGGCCTGGAATAGATGCTACTTCCAACGTATCTAAGCCGGATATTGTTCTAGATGATCCAATTCAGCAAGCAAAACTCTTGTCTTCAATCATAGACCATTCTCGTCAAACTTCCCAAAGTGCAGACATGGCTGCCATTCTACAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGATGTTGCTGGCTGGTCAAAATTTTCTTCACAGTCTACTTCCGATCCTCTACAAAGTAAACTTGACTTGCACCATGAACTTAACGTGTCTGCTCAGGCCCCTTTTGGATTCCAACAACAGAGATTGCAACCACAGCCATCCATAACAAATTTACTTGCTCAAGTTACTGATAATCCTACATTAACTCCAGATAAGTTTCTTCCTTCCAGTTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCACCTATTGCAGTTGCATTCTCAGGTGCCTTTTTCTGCACAACAAATGTCGTTGTTGGACAAACTTTTACTACTTAAGCAGCAGCAAAAACAAGAGGAGCAACAACAATTGTTACAGCAACAGCTGCTCTCCCAGGTTCTATCAGAGCATCAGTCACGTCAGCAATTTGTTGATCCAAGTTTTGGACAGTTACAAGGTGCTCCAAGACCTATTGTAAATGTATCTATTGATCCATCTCAAGTTCAGCTATCACGAGAGAACTTTCAGATTGGTTTGCAGAAGCCCTTAAATGTACCAACTGATCGTCCAACTACCTATGGAAATATGGCTCTGCAAGTTACCCAGGGAGCTAGTTACAATGTTAATTCAGAAGATCCCTCCCTTGTTCTTCCACATCAAATGTTTGGAAATGTTGTTCAGCAGAAGAGTTGGAATGCTGCTCTTCCAGAGCAGCTTAATGATATTCATTCGAAAGATATGTTACCTGGATCCGAAGTTGCTGTCGGCTCACTTTTGCCTAGAATGTCTAGCAAATCAAACGAGGATGTGAATCTTGTACCAACTTCATCTGATAGCCACACTATTAAAGCTTTGGAGCAGATATCAGAGGATGTGCAAAGGCCGGATGCAACTGCCTCATCTTTTGCATCTGATGTTACTGTAGAACCTCTTCCTCTCAAGAGTGAAGAAGTCTTCGTTGCTATACCACCAGCAGAAGTTCGCAATATTGAAATTTTCATTCCCGTTAGTGTACCTGTTGTGAAGGTTGAAGAAGCTAGTATGCCTGTTGAAAAGCTTGAAAGGGGTGTATGCAAAGAAGAGTCCACTTTGGAGACAGAATTAAAAAATGTTGAAGTACAAGAACCTAGAAAATCTTCTGATAAAAAGACCAAGAGGCAAAAATCTTCAAAGTTGCTTTCCTCTGACCAGGCCAGGGAGTCCAAGAATTCTGTTATTCATCAGTCAAAGCAACCAAAAAGTGGAAAAGCAGAAAATGATTTGAAATTTAAGGCAGATAATATCGCGGGAAAATCAAGTGATACATCTTCCTCTCAGAAGATGAGGGATGGGGATGCCAAAATTGCCACTGTGGATAGTCAACCAGTTCAAGGCTTTGCCTCTGCTATAAATTCTTGGAATGATGGTGAAACTGTCCAAGTGAAGGATGACTCCAGACGCACTGGGTCTGACTCTGTTCTTAACTCCCAAATTCAATCTAGTCAAAGAGCTTGGAAAGTTGGTACAGGTTTCAAGGCGAAGTCTTTATTGGAAATTCAGGAGGAAGAGCAAAAAACTGCACATATAGAACCTGCTGTATCAGATATTTCAACTTCTATCAACTCTATGAGTTTATCAACTCCTTGGTCTGGGATCGTGAGCAATTTGGAACCAAAAGCTTCCAGAGAAGTTCTTAAAGATTCTGTGAATTCTGAACCTAGTGAGAAACATGAGAATTTATTGAATTCAAAGAGTAGAAAGAGCCAATTGCATGATCTGCTGGCGGAAGATGATATGGAGAAGTCTGGTTCAGGTGATGTTCGCATTTCTAATTCTGTTCAGATTGCTTCTTCTACTCAGGTCGTGGCAACAAAAGAGGAATCTATGGATGACAATTTTATTGAGGCAAAAGACACCAAAAAAAGCCGTAAGAAGAATGCTAAGGCTAAGGGTGTTGGAACAAAGGCCACCTCTTCAGCCCCTTCTGCTGATGTACCTGTTGGTTCGAGTCCCATTGAGAAAGGGAAAATCTCCCGCCAAATACAGCAGGGAAAGGATGCAATGCCTACCATTCCATCTGGGCCTTCTTTTGGTGATTTTGTTCTATGGAAGGGAGAAGCTGCTAACGTGGCTCCTGCTCCTCTAGCATGGTCAAGTGACTCTGGGAAGGCCACCAAACCCACATCTTTGAGGGATATTCAGAAGGAGCAGGGGAAAAAAATCTCTTCTGCTCAGCATTCTCATCAAATCCCTACTCCTCAAAAAGCTCAGCCAATTCAGGTTGGCCGTAGCAGCAGCACTAGTACTCCTTCCAGGGCTCTTTCTGCTTCTTCCCCATTGAAGGCTGCATCGTCCCCCCTTCAGAATGTTCCTTCTCAGTCGAAGTATGGAGGTGATGATGACCTATTTTGGGGGCCCATCGAGTCGAAGCAAGAAAATCAGCAGGTTGGAAGGGGAAATAGGAACACACCTGCAAAAGCAGCAGCTTCGACTGGGTTGTTAAGTCGTCAAAAATCTAGTGGCAAAGCTGATTATCTTTCATCCTCGCCTTCACAATTGTCTCAGAAAGGCAAACAAGATCCAGTTACCAAGCACTCAGAAGCGATGGGCTTCCGCGATTGGTGTGAGAGTGAATGTGGAAGGCTCATTGGGACTAAAGACACAAGTTTCCTGGAATTCTGCTTGAAGCAGTCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAACCTTGGATCATTTGATCCTGACCATGGGTTCATTGATCGATTTCTCAATTACAAGGATATGCTCCCAGCAGATGTTCTTGAAATTGCATTTCAAAATCGGAGCGATAGGAAGGTATCTGCGATAGCTGCCCGAGAAGTGAATTCTGGAAATGCTGGTGGAGATCCGGACCCTGATGTCTCGTCCGCAAAGGGTGGAGGAAAGAAGAAAGGGAAGAAAGGGAAGAAGGTTAGTCCATCAGTTTTGGGTTTCAATGTAGTTAGTAACCGAATTATGATGGGCGAGATTCAGACCATTGAAGATTAG 5442 43.48 MAARFDLGSRPNLSVSSPLHSAHDVQGSENPIPLSPQWLMPKPGESKLGIGTGENHFSHQPAYGNHMNMKGPENYEDMNDIQKKKEVFKPSLTDSETGRRDRWHDEERENNSSMRKDRWRDSEKEVGDSRKMDRWTEDSSTRLFRESRRGPSERWSDSSNRDNAQYDQRRESKWNTRWGPDDRDTEGIREKKVDFGRDSDLHFDKNYGKNDRDGEHYRPWRSSSSQARGKGEPPHLQTQTPIKQVPAFSHRGRADNTPPTFSLGHGIISSGVNTTNSIYSSSNSLGAASEKSGREPYHHKYSRIKLLDVFRTTNLTSQQTLKDGFVPVPTLMLDEPLEPLALCAPTAEEMTLLKAIDKGEIVSSGAPQVSKDGRNTSEFMQTRRAKLGISPFLGSREDLPHGSDDYNDDKDDSTTKPGHTNYSEVSTERQVPYHRPQSKIETIEEHMAHASSKFKSEAFREDDNAMRKAVEEPVNVHPGSTWEASSLEQSLNKSLPDWRDHNNISSGTPDKGWLQPAKNLNGGWGSNSTTLSYPKDNPKWQTAEEPIIRRQLSGILDKEQLARKAVQSAPEDLQLHYIDPKGAIQGPFSGADIIQWFEGGYFGLDLLVRLANAPNDLPFSALGDVMPHLRSKAKPPPGFSGPKPNEFADTVGNASYGSMGRLHTGLNEIDTLRNEIRHKHGSTVEAENRFLESLMSSNIASPLEKSAFSEGMAGYFGNNCNNLSSLGIDNGSNLFLLAKRMELERQRSLTNPHAFWPGIDATSNVSKPDIVLDDPIQQAKLLSSIIDHSRQTSQSADMAAILQGLSDKAPPGINDVAGWSKFSSQSTSDPLQSKLDLHHELNVSAQAPFGFQQQRLQPQPSITNLLAQVTDNPTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQLLSQVLSEHQSRQQFVDPSFGQLQGAPRPIVNVSIDPSQVQLSRENFQIGLQKPLNVPTDRPTTYGNMALQVTQGASYNVNSEDPSLVLPHQMFGNVVQQKSWNAALPEQLNDIHSKDMLPGSEVAVGSLLPRMSSKSNEDVNLVPTSSDSHTIKALEQISEDVQRPDATASSFASDVTVEPLPLKSEEVFVAIPPAEVRNIEIFIPVSVPVVKVEEASMPVEKLERGVCKEESTLETELKNVEVQEPRKSSDKKTKRQKSSKLLSSDQARESKNSVIHQSKQPKSGKAENDLKFKADNIAGKSSDTSSSQKMRDGDAKIATVDSQPVQGFASAINSWNDGETVQVKDDSRRTGSDSVLNSQIQSSQRAWKVGTGFKAKSLLEIQEEEQKTAHIEPAVSDISTSINSMSLSTPWSGIVSNLEPKASREVLKDSVNSEPSEKHENLLNSKSRKSQLHDLLAEDDMEKSGSGDVRISNSVQIASSTQVVATKEESMDDNFIEAKDTKKSRKKNAKAKGVGTKATSSAPSADVPVGSSPIEKGKISRQIQQGKDAMPTIPSGPSFGDFVLWKGEAANVAPAPLAWSSDSGKATKPTSLRDIQKEQGKKISSAQHSHQIPTPQKAQPIQVGRSSSTSTPSRALSASSPLKAASSPLQNVPSQSKYGGDDDLFWGPIESKQENQQVGRGNRNTPAKAAASTGLLSRQKSSGKADYLSSSPSQLSQKGKQDPVTKHSEAMGFRDWCESECGRLIGTKDTSFLEFCLKQSRSEAELLLIENLGSFDPDHGFIDRFLNYKDMLPADVLEIAFQNRSDRKVSAIAAREVNSGNAGGDPDPDVSSAKGGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTIED 1813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25398957 25408309 - Sed0014403.1 Sed11g1026 729672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1612 1663 - -
Sed11g1026 1813 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1813 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1 240 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1437 1497 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 418 433 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1367 1408 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1207 1223 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 390 435 - -
Sed11g1026 1813 SUPERFAMILY GYF domain 565 629 IPR035445 -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 163 219 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 220 240 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 10 33 - -
Sed11g1026 1813 ProSiteProfiles GYF domain profile. 572 623 IPR003169 GO:0005515(InterPro)
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1278 1304 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1367 1415 - -
Sed11g1026 1813 CDD GYF 572 629 IPR003169 GO:0005515(InterPro)
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1516 1669 - -
Sed11g1026 1813 Gene3D - 560 640 IPR035445 -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1179 1264 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1224 1238 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1547 1599 - -
Sed11g1026 1813 SMART gyf_5 573 628 IPR003169 GO:0005515(InterPro)
Sed11g1026 1813 Pfam GYF domain 576 612 IPR003169 GO:0005515(InterPro)
Sed11g1026 1813 MobiDBLite consensus disorder prediction 76 156 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1760 1790 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 398 417 - -
Sed11g1026 1813 MobiDBLite consensus disorder prediction 1179 1206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1026 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1338 Sed-Chr10:29012413 Sed11g1026 Sed-Chr11:25398957 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44