Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1035 ATGCGAATTCCCAGGAGACAGATTTCGTTATGCTTCTCCTTGTTTTCGATTGAATTTTCATACCCTTTATCCTCTCGGAAATTTCTTGGAGTTCCCCATTTCTTTATCCAAAAACCCAAAGGAATGCATACCCTAGGATTAAATCGGTTGCGTTCTACTAATACTATCGGTGAGAATCTAGGAACTGTCATGAAAGACAAGAGAACGCATTCTCTGGATGTTACCCACAAAGAGGATGTTCAGGAACCATGCATATGGTCATCATCTGTAGAATGTGAAATTGGCATTGGGAAGCAGATCTTTTGTAATAGATCTTTGAATATGAAAAATATTGTTGCCGTGGGGTTTGACATGGATTACACGTTGGCACAATACAAGCCAGAAACTTTTGAATCCCTTGCATATGAAGGCACAATAAGAAAGCTGGTTTATGATTTGGGATATTCTGAAGAGTTGCTGAATTGGTCATTTGATTGGAAATACATGGTCAGAGGTTTGGTTCTTGATAAAAAGAGAGGCAACATTTTGAAGATGGATAGGCACAAATATGTCAAAGTGGCCTACCATGGTTTCAAAGAGTTGTCCAAGGATGATAAAGTTGAGACCTATGGAAATACTCTAGTACGGGATTCTTTTGATGAACCCGACTATGCTCTCATTGATACCCTTTTTTCACTAGCTGAAGCCTACTTATTTGCTCAACTGGTTGACTTTAAGGATAATAATCCAGGAAAAGTTCCGGAGTATATCGATTATGCTCGGATGTACAAAGATGTTAGAGCTGCTGTAGATTTGTGTCACCGTGATGGAACCTTAAAGCAAATGGTTGCAAATGATCCCAAAAGGTATATCAATGTGGATACCTCAATTGTGCCCATGCTTAAAATGCTCAGAGATTCTGGCCGTTCTACATTCTTGGTGACAAACAGCCTATGGGACTATTCGCACGTGGTGATGAACTTTCTATGTAATTCTTCTGCACCAGATGGTGATCAGAAATGCAATTTTGATTGGCTTCAGTATTTCGATGTTGTCATCACTGGCAGTGCTAAACCAGGCTTTTTCCACGAGGACAACCGTGCTAATCTATTCGAGGTCGAAGAAAAGTCAGGAATGCTACTTAATACTGATAATGGCTCCCCTATGCCTCAGGTGGGAAACACTTCACCAGAATTGTTTTCGCCTACGAAGGTAGATAAATCTTGCAGAGTGTTTCAGGGAGGCAACGTCAGGCACCTGCATAAACTTCTTTCCATTGAATCAAGTTCGCAGGTTCTCTATGTTGGGGATCACATCTACGGAGATATATTACGGAGCAAAAAGGCTCTTGGATGGAGGACTATGCTTGTTGTTCCAGAGCTCGAAAGGGAGGTCGAGCTCTTATGGGAATTGAGAAAGAGCCGCAAGCAACTTCAGCTACTAAGAAATGACCGGGATAACATTGAAGACAAAATACATCATTTGAAGTGGTCTCTCAAGTTTGATGACGTCGAGGCTGACGAGAAGGAAAGATTATCTACTGAACTACATCAGTTAGAGGGCGAACGAGAACAAATACGACGTAGTCATCAAGGCGCCCTACGGGATTGTCACCGACAGTTTCATGGGGTTTGGGGACAGCTGATGAAGACTGGATATCAAAACTCTAGGTTTGCTCATCAAGTAGAGAGATTTGCATGCCTTTACAGCAGCCAAGTGACCAACTTGAGCCTTTATTCCCCAGATAAATACTACAGGCCTAGTGAAGATTTTATGCCCCATGAATTTGGCATCGTCCCTTTGTGA 1785 41.79 MRIPRRQISLCFSLFSIEFSYPLSSRKFLGVPHFFIQKPKGMHTLGLNRLRSTNTIGENLGTVMKDKRTHSLDVTHKEDVQEPCIWSSSVECEIGIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYSEELLNWSFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFKELSKDDKVETYGNTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPGKVPEYIDYARMYKDVRAAVDLCHRDGTLKQMVANDPKRYINVDTSIVPMLKMLRDSGRSTFLVTNSLWDYSHVVMNFLCNSSAPDGDQKCNFDWLQYFDVVITGSAKPGFFHEDNRANLFEVEEKSGMLLNTDNGSPMPQVGNTSPELFSPTKVDKSCRVFQGGNVRHLHKLLSIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREVELLWELRKSRKQLQLLRNDRDNIEDKIHHLKWSLKFDDVEADEKERLSTELHQLEGEREQIRRSHQGALRDCHRQFHGVWGQLMKTGYQNSRFAHQVERFACLYSSQVTNLSLYSPDKYYRPSEDFMPHEFGIVPL 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25583006 25590301 - Sed0009494.1 Sed11g1035 729681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1035 594 Coils Coil 464 484 - -
Sed11g1035 594 Coils Coil 502 529 - -
Sed11g1035 594 PIRSF NT5C2 83 593 IPR016695 -
Sed11g1035 594 NCBIfam HAD-IG family 5'-nucleotidase 100 470 IPR008380 -
Sed11g1035 594 Pfam 5' nucleotidase family 100 589 IPR008380 -
Sed11g1035 594 CDD HAD_cN-II 101 475 - -
Sed11g1035 594 FunFam Cytosolic purine 5-nucleotidase 260 480 - -
Sed11g1035 594 Gene3D - 96 146 IPR023214 -
Sed11g1035 594 Gene3D - 260 480 IPR023214 -
Sed11g1035 594 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 77 588 IPR008380 GO:0008253(PANTHER)
Sed11g1035 594 SUPERFAMILY HAD-like 98 590 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1035 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3066 Sed-Chr4:41685528 Sed11g1035 Sed-Chr11:25583006 4.80E-57 dispersed
Sed10g1351 Sed-Chr10:29136749 Sed11g1035 Sed-Chr11:25583006 1.70E-243 dispersed
Sed10g1350 Sed-Chr10:29136749 Sed11g1035 Sed-Chr11:25583006 1.60E-296 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48