Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g1049 | ATGTACTCTGCCCTACCCCAAAAAAAATTCATGCTCTCCTTCTGCTTTATGTGCTTTGCGGCGGCTGCCGCTCTAGGCGCCGCCGTCGTGTTTCGGTTTTCTGTGAAGAGGAAGAATAAGGCGTGGCCGCCGAGCTCTGATTGTTCTCATCCTCCTGGAAGCAGAGGGTTGCCTATGCTCGGCGAGACGATCCAGTTCATGGCTGCCGTCAGTAGTAGCAACGGTGTCTATGATTTCGTTAGAATCCGCTGCCTTCGATATGGGCGATGCTTTAAGACTCGAATATTTGGAGAGACGCATGTGTTCGTTTCGAGTACTGACTCAGCGAAGCTGATACTGAATGATGGGAGAGGCAGCTTCACGAAGAAGTACATAAGGTCGATCGCTGAGCTCGTTGGCCATGAGAGTTTGCTCTGCGCTTCGCATGTGCACCATAAATTCTTACGCGGACGTCTCATCAACTTGTTCTCCACCAGTTTTCTAGCTTCCTTTGTTGCGCAGTTCGATCAACAAATCGTTGAGACGCTTCGCTGTTGGGAAACTGGATCCACCATCATTCTCCTCAACCAAGCCCTCAAGATAACATGCAAAGCAATGTGCAAGATGCTGATGAGCTTGGAAAATGAAGAGGAATTAGAGCAATTGCAAAAGGAGGTAGCTCATGTATGCGAAGCTATGCTCGCATTCCCATGGCGCTTTCCAGGGACAAGATTCCACAATGGCCTCAAGGCAAGAAGAAGAATCATAAAGAGATTCGAAAAGGCAATCCGGGAAAGACGGGGATCGGAAGCTCGATGTGGGGATTTCCTCCAAAGGTTGTTGATGGAGGAGGGCGACGGTGGCTCGAGAGTGTTGTCCGATGCGGAGATCGGAGATAATATATTGACGATGTTGATCGCCGGGCAGGATACGACCGCAAGTGCCATCACTTGGATGGTCAAGTTCTTGGATGAGAACCAGGATGTCCTTCAACATCTAAAGGATGAACAATTTGAAATATTGACCAAACAACAGGATTGTGGGAGTTGTTTCCTTACGTTGGAAGATCTTGGCAACATGCCTTATGCTGCTAAGGTTGTCAAAGAATCCTTGAGGTTAGCATCTGTGGTACCGTGGTTCCCAAGGCTAGTTCTCCAAGACTGTGACATTGAAGGCTACAAAGTGAAGAAAGGTTGGAATGTTAACATTGATGTAAGATCACTCCACACAGATCCTTCTGTCTACAATCATCCTACCAGCTTCAATCCACCAAGATTTGATGAAGAAGCAAAGGCGTATAGTTTTCTAGCTTTTGGGATGGGAAGCAGGCAATGCCTTGGAATGAATGTGGCCAAGTCCATGATGTTAGTCTTTCTTCACCGCCTGGTCACTTCTTACAGATGGAAGGTGGTGGACTCGGACTCCAGCATTGAGAAGTGGGCGCTTTTTTCTAAATTAAAGAGCGGTTGCCCCATTATTGTAGCACATATTGAATCCTAA | 1479 | 47.46 | MYSALPQKKFMLSFCFMCFAAAAALGAAVVFRFSVKRKNKAWPPSSDCSHPPGSRGLPMLGETIQFMAAVSSSNGVYDFVRIRCLRYGRCFKTRIFGETHVFVSSTDSAKLILNDGRGSFTKKYIRSIAELVGHESLLCASHVHHKFLRGRLINLFSTSFLASFVAQFDQQIVETLRCWETGSTIILLNQALKITCKAMCKMLMSLENEEELEQLQKEVAHVCEAMLAFPWRFPGTRFHNGLKARRRIIKRFEKAIRERRGSEARCGDFLQRLLMEEGDGGSRVLSDAEIGDNILTMLIAGQDTTASAITWMVKFLDENQDVLQHLKDEQFEILTKQQDCGSCFLTLEDLGNMPYAAKVVKESLRLASVVPWFPRLVLQDCDIEGYKVKKGWNVNIDVRSLHTDPSVYNHPTSFNPPRFDEEAKAYSFLAFGMGSRQCLGMNVAKSMMLVFLHRLVTSYRWKVVDSDSSIEKWALFSKLKSGCPIIVAHIES | 492 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 25789454 | 25799428 | - | Sed0011639.1 | Sed11g1049 | 729695 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g1049 | 492 | Pfam | Cytochrome P450 | 51 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | E-class P450 group I signature | 357 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | E-class P450 group I signature | 438 | 461 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | E-class P450 group I signature | 289 | 306 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | E-class P450 group I signature | 428 | 438 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | E-class P450 group I signature | 309 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | E-class P450 group I signature | 397 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | SUPERFAMILY | Cytochrome P450 | 47 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 431 | 440 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed11g1049 | 492 | Gene3D | Cytochrome P450 | 42 | 489 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PANTHER | CYTOCHROME P450 26 | 50 | 459 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Sed11g1049 | 492 | PRINTS | P450 superfamily signature | 358 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | P450 superfamily signature | 300 | 317 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | P450 superfamily signature | 429 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g1049 | 492 | PRINTS | P450 superfamily signature | 438 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed11g1049 | Sed-Chr11:25789454 | Sed13g1742 | Sed-Chr13:22400999 | 1.40E-54 | dispersed | |
| Sed10g2110 | Sed-Chr10:37578772 | Sed11g1049 | Sed-Chr11:25789454 | 1.40E-83 | transposed | |
| Sed10g0936 | Sed-Chr10:7537527 | Sed11g1049 | Sed-Chr11:25789454 | 4.30E-117 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g1049 | - | - | - | 0.0 |