Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1049 ATGTACTCTGCCCTACCCCAAAAAAAATTCATGCTCTCCTTCTGCTTTATGTGCTTTGCGGCGGCTGCCGCTCTAGGCGCCGCCGTCGTGTTTCGGTTTTCTGTGAAGAGGAAGAATAAGGCGTGGCCGCCGAGCTCTGATTGTTCTCATCCTCCTGGAAGCAGAGGGTTGCCTATGCTCGGCGAGACGATCCAGTTCATGGCTGCCGTCAGTAGTAGCAACGGTGTCTATGATTTCGTTAGAATCCGCTGCCTTCGATATGGGCGATGCTTTAAGACTCGAATATTTGGAGAGACGCATGTGTTCGTTTCGAGTACTGACTCAGCGAAGCTGATACTGAATGATGGGAGAGGCAGCTTCACGAAGAAGTACATAAGGTCGATCGCTGAGCTCGTTGGCCATGAGAGTTTGCTCTGCGCTTCGCATGTGCACCATAAATTCTTACGCGGACGTCTCATCAACTTGTTCTCCACCAGTTTTCTAGCTTCCTTTGTTGCGCAGTTCGATCAACAAATCGTTGAGACGCTTCGCTGTTGGGAAACTGGATCCACCATCATTCTCCTCAACCAAGCCCTCAAGATAACATGCAAAGCAATGTGCAAGATGCTGATGAGCTTGGAAAATGAAGAGGAATTAGAGCAATTGCAAAAGGAGGTAGCTCATGTATGCGAAGCTATGCTCGCATTCCCATGGCGCTTTCCAGGGACAAGATTCCACAATGGCCTCAAGGCAAGAAGAAGAATCATAAAGAGATTCGAAAAGGCAATCCGGGAAAGACGGGGATCGGAAGCTCGATGTGGGGATTTCCTCCAAAGGTTGTTGATGGAGGAGGGCGACGGTGGCTCGAGAGTGTTGTCCGATGCGGAGATCGGAGATAATATATTGACGATGTTGATCGCCGGGCAGGATACGACCGCAAGTGCCATCACTTGGATGGTCAAGTTCTTGGATGAGAACCAGGATGTCCTTCAACATCTAAAGGATGAACAATTTGAAATATTGACCAAACAACAGGATTGTGGGAGTTGTTTCCTTACGTTGGAAGATCTTGGCAACATGCCTTATGCTGCTAAGGTTGTCAAAGAATCCTTGAGGTTAGCATCTGTGGTACCGTGGTTCCCAAGGCTAGTTCTCCAAGACTGTGACATTGAAGGCTACAAAGTGAAGAAAGGTTGGAATGTTAACATTGATGTAAGATCACTCCACACAGATCCTTCTGTCTACAATCATCCTACCAGCTTCAATCCACCAAGATTTGATGAAGAAGCAAAGGCGTATAGTTTTCTAGCTTTTGGGATGGGAAGCAGGCAATGCCTTGGAATGAATGTGGCCAAGTCCATGATGTTAGTCTTTCTTCACCGCCTGGTCACTTCTTACAGATGGAAGGTGGTGGACTCGGACTCCAGCATTGAGAAGTGGGCGCTTTTTTCTAAATTAAAGAGCGGTTGCCCCATTATTGTAGCACATATTGAATCCTAA 1479 47.46 MYSALPQKKFMLSFCFMCFAAAAALGAAVVFRFSVKRKNKAWPPSSDCSHPPGSRGLPMLGETIQFMAAVSSSNGVYDFVRIRCLRYGRCFKTRIFGETHVFVSSTDSAKLILNDGRGSFTKKYIRSIAELVGHESLLCASHVHHKFLRGRLINLFSTSFLASFVAQFDQQIVETLRCWETGSTIILLNQALKITCKAMCKMLMSLENEEELEQLQKEVAHVCEAMLAFPWRFPGTRFHNGLKARRRIIKRFEKAIRERRGSEARCGDFLQRLLMEEGDGGSRVLSDAEIGDNILTMLIAGQDTTASAITWMVKFLDENQDVLQHLKDEQFEILTKQQDCGSCFLTLEDLGNMPYAAKVVKESLRLASVVPWFPRLVLQDCDIEGYKVKKGWNVNIDVRSLHTDPSVYNHPTSFNPPRFDEEAKAYSFLAFGMGSRQCLGMNVAKSMMLVFLHRLVTSYRWKVVDSDSSIEKWALFSKLKSGCPIIVAHIES 492
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 25789454 25799428 - Sed0011639.1 Sed11g1049 729695
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1049 492 Pfam Cytochrome P450 51 467 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 SUPERFAMILY Cytochrome P450 47 487 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed11g1049 492 Gene3D Cytochrome P450 42 489 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PANTHER CYTOCHROME P450 26 50 459 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Sed11g1049 492 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed11g1049 492 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1049 Sed-Chr11:25789454 Sed13g1742 Sed-Chr13:22400999 1.40E-54 dispersed
Sed10g2110 Sed-Chr10:37578772 Sed11g1049 Sed-Chr11:25789454 1.40E-83 transposed
Sed10g0936 Sed-Chr10:7537527 Sed11g1049 Sed-Chr11:25789454 4.30E-117 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1049 - - - 0.0