Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1055 ATGGCGACACCGGTTGAGCCTCCGAATGGGGTTAGATCTCAAGGGAAGCATTATTATTCAATGTGGAAGACATTGTTTGAGATTGATACTAAATATGTCCCCATCAAGCCTATTGGTCAAGGGACATATGGTATTGTGTGTTCTTCTGTCAATAGGGAGACGAACGAGAGAGTTGCGATAAAGAGGATACATAATGTATGTGATGATGTGATATGTTCGAAAGATGTGATGATGCCTACCCACAGGAGAAGTTTTACAGATGTTTATTTGGTGTTTGTCTTCATTACTTGGTTAATTGGTAGTTTGCTCAGAGGCTTAAAGTATCTGCACTCTGCAAATATTCTACATCGAGACTTGAAGCCTGGGAACCTCCTTGTCAATGCAAATTATGATCTGAAGATATATGATTTCGGGTTAGCGCGTACGAACAACGGCAGCAAGAAGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTACTGCTAAGATGTGAGAATTATGGGACACCAATTGATGTGTGGTCTATAGGGTGCATCTTTGCTGAACTTCTCTGTAGGAAACCTATCTTCAAAGGTACCAATTATTTGAATCAACAGAACTTGATAATTGACATACTGGGTAGCCAGAGAGATGAAGATCTCGAGTTTATAACCCATCAAAGGCCACGGACGTACATAAAATCCATCCCATACCCTCGAGGGGATCCGCTTTCTCATCTTTATCCGAGTGATCCTCTTGCAATCGATCTGCTACAAAAGGTGCTTGTTTTTGACCCATCAAAGAGGATTAGTGTAACTCAAGCATTGCAACATCCTTACATGGCTTCCCTGTATGATCCAAACAGCAATCCTCCAGCTCAGGCACCGATCGATCTCGACATAGATGAGGGACTTGGAGAAGAAATGGTACGAGAGATGGTGTGGAGAGAAATGCTTCATTACCATCCTGAACGTCGGTATGAACAGGCAGAAATGACAATTTTCTTGACTGATCCTCGCTCTCGATCCCGCTTAGAGGCCTTGGAGGTTGGTGATGGTGACAAAAGTTCAGTTTCTTCCCCATTTCAAACTGTTGGAGATACTCACTATGCTCACCATGTGGCAATTGTCCCACATTGA 1125 43.11 MATPVEPPNGVRSQGKHYYSMWKTLFEIDTKYVPIKPIGQGTYGIVCSSVNRETNERVAIKRIHNVCDDVICSKDVMMPTHRRSFTDVYLVFVFITWLIGSLLRGLKYLHSANILHRDLKPGNLLVNANYDLKIYDFGLARTNNGSKKTEYVVTRWYRAPELLLRCENYGTPIDVWSIGCIFAELLCRKPIFKGTNYLNQQNLIIDILGSQRDEDLEFITHQRPRTYIKSIPYPRGDPLSHLYPSDPLAIDLLQKVLVFDPSKRISVTQALQHPYMASLYDPNSNPPAQAPIDLDIDEGLGEEMVREMVWREMLHYHPERRYEQAEMTIFLTDPRSRSRLEALEVGDGDKSSVSSPFQTVGDTHYAHHVAIVPH 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25856287 25859140 + Sed0002585.1 Sed11g1055 729701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1055 374 FunFam Mitogen-activated protein kinase 88 294 - -
Sed11g1055 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1055 374 Gene3D Phosphorylase Kinase; domain 1 74 312 - -
Sed11g1055 374 Gene3D Transferase(Phosphotransferase) domain 1 94 302 - -
Sed11g1055 374 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 314 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed11g1055 374 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524(InterPro)
Sed11g1055 374 ProSiteProfiles Protein kinase domain profile. 1 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1055 374 SUPERFAMILY Protein kinase-like (PK-like) 24 283 IPR011009 -
Sed11g1055 374 Pfam Protein kinase domain 99 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1055 374 Gene3D Phosphorylase Kinase; domain 1 12 70 - -
Sed11g1055 374 SMART serkin_6 32 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1055 Sed-Chr11:25856287 Sed13g1026 Sed-Chr13:8384476 9.60E-125 dispersed
Sed10g1377 Sed-Chr10:29667852 Sed11g1055 Sed-Chr11:25856287 1.80E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79903 PF00069 Pkinase 1.60E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1055 K20535 - csv:101213478 509.605