Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1055 | ATGGCGACACCGGTTGAGCCTCCGAATGGGGTTAGATCTCAAGGGAAGCATTATTATTCAATGTGGAAGACATTGTTTGAGATTGATACTAAATATGTCCCCATCAAGCCTATTGGTCAAGGGACATATGGTATTGTGTGTTCTTCTGTCAATAGGGAGACGAACGAGAGAGTTGCGATAAAGAGGATACATAATGTATGTGATGATGTGATATGTTCGAAAGATGTGATGATGCCTACCCACAGGAGAAGTTTTACAGATGTTTATTTGGTGTTTGTCTTCATTACTTGGTTAATTGGTAGTTTGCTCAGAGGCTTAAAGTATCTGCACTCTGCAAATATTCTACATCGAGACTTGAAGCCTGGGAACCTCCTTGTCAATGCAAATTATGATCTGAAGATATATGATTTCGGGTTAGCGCGTACGAACAACGGCAGCAAGAAGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTACTGCTAAGATGTGAGAATTATGGGACACCAATTGATGTGTGGTCTATAGGGTGCATCTTTGCTGAACTTCTCTGTAGGAAACCTATCTTCAAAGGTACCAATTATTTGAATCAACAGAACTTGATAATTGACATACTGGGTAGCCAGAGAGATGAAGATCTCGAGTTTATAACCCATCAAAGGCCACGGACGTACATAAAATCCATCCCATACCCTCGAGGGGATCCGCTTTCTCATCTTTATCCGAGTGATCCTCTTGCAATCGATCTGCTACAAAAGGTGCTTGTTTTTGACCCATCAAAGAGGATTAGTGTAACTCAAGCATTGCAACATCCTTACATGGCTTCCCTGTATGATCCAAACAGCAATCCTCCAGCTCAGGCACCGATCGATCTCGACATAGATGAGGGACTTGGAGAAGAAATGGTACGAGAGATGGTGTGGAGAGAAATGCTTCATTACCATCCTGAACGTCGGTATGAACAGGCAGAAATGACAATTTTCTTGACTGATCCTCGCTCTCGATCCCGCTTAGAGGCCTTGGAGGTTGGTGATGGTGACAAAAGTTCAGTTTCTTCCCCATTTCAAACTGTTGGAGATACTCACTATGCTCACCATGTGGCAATTGTCCCACATTGA | 1125 | 43.11 | MATPVEPPNGVRSQGKHYYSMWKTLFEIDTKYVPIKPIGQGTYGIVCSSVNRETNERVAIKRIHNVCDDVICSKDVMMPTHRRSFTDVYLVFVFITWLIGSLLRGLKYLHSANILHRDLKPGNLLVNANYDLKIYDFGLARTNNGSKKTEYVVTRWYRAPELLLRCENYGTPIDVWSIGCIFAELLCRKPIFKGTNYLNQQNLIIDILGSQRDEDLEFITHQRPRTYIKSIPYPRGDPLSHLYPSDPLAIDLLQKVLVFDPSKRISVTQALQHPYMASLYDPNSNPPAQAPIDLDIDEGLGEEMVREMVWREMLHYHPERRYEQAEMTIFLTDPRSRSRLEALEVGDGDKSSVSSPFQTVGDTHYAHHVAIVPH | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25856287 | 25859140 | + | Sed0002585.1 | Sed11g1055 | 729701 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1055 | 374 | FunFam | Mitogen-activated protein kinase | 88 | 294 | - | - | |
Sed11g1055 | 374 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 114 | 126 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed11g1055 | 374 | Gene3D | Phosphorylase Kinase; domain 1 | 74 | 312 | - | - | |
Sed11g1055 | 374 | Gene3D | Transferase(Phosphotransferase) domain 1 | 94 | 302 | - | - | |
Sed11g1055 | 374 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 26 | 314 | IPR050117 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed11g1055 | 374 | ProSitePatterns | Protein kinases ATP-binding region signature. | 38 | 61 | IPR017441 | GO:0005524(InterPro) | |
Sed11g1055 | 374 | ProSiteProfiles | Protein kinase domain profile. | 1 | 276 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1055 | 374 | SUPERFAMILY | Protein kinase-like (PK-like) | 24 | 283 | IPR011009 | - | |
Sed11g1055 | 374 | Pfam | Protein kinase domain | 99 | 276 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed11g1055 | 374 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 70 | - | - | |
Sed11g1055 | 374 | SMART | serkin_6 | 32 | 276 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1055 | Sed-Chr11:25856287 | Sed13g1026 | Sed-Chr13:8384476 | 9.60E-125 | dispersed | |
Sed10g1377 | Sed-Chr10:29667852 | Sed11g1055 | Sed-Chr11:25856287 | 1.80E-126 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79903 | PF00069 | Pkinase | 1.60E-46 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1055 | K20535 | - | csv:101213478 | 509.605 |