Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1065 ATGGCAGACGCCAGCTCGGTCTCCGACAAGAGAATGTCGTGTTCGATCCCCGAGAGGTTCCAGCTCCATGCCGCCATGTTGGCCTTGCAATTCGGCTATGCCGGCTTCCATGTCGTCTCTAGAGCTGCCCTCAATATGGGCATTAGTAAACTCGTCTTCCCCGTCTATCGAAACGTCATCGCCTTGCTCCTCCTCCTTCCCTTTGCATATTTCCTAGAAAAGAGGAATAGGCCTGCACTTACACTCAACTTTGTTCTTCAATTCTTCCTGCTTGCTCTCATTGGAATTACAGCCAATCAAGGGTTTTACTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAGAATTCTGTTCCTGCCATTACTTTCCTCATGGCTGCTATTTTTAGGATTGAACAAGTGCGGCTGGACCGGAAAGATGGGATAGCGAAGGTGGTGGGAACTCTATGCTGCGTGGCCGGAGCAACGGTGATCACACTATACAAAGGGCCGACTATCTACAGCCCGACAACGACGGTGACGTTGCAAAGCACAGTGGCGACGGCGGGGAAGCTGATGGGGCCAGGAATGTTCCCATCACTAGGCGACGCGAAGGGCAAAAGCTGGACGTTAGGGTGCATTTACTTGTTCGGGCACTGCTTATCGTGGTCGGCGTGGCTGGTTCTACAAGCTCCAGTGCTGAAGAAGTACCCGGCTCGACTCTCGGTCACATCGTTCACTTGCTTCTTCGGCCTCCTCCAATTCTTGATCATTGCCGTGGCGTTCGAACGCGACGCTCAGGCGTGGGTGTTCCACTCGGGTGCTGAAGCCTTCAGCATTGTGTATGCGGGGGTGGTGGCATCTGGGATAGCATTTGCAGTACAGATATGGTGCATAGACAGAGGTGGCCCAGTGTTTGTTGCTGTGTACCAACCAGTTCAAACCTTTGTTGTTGCTGTCATGGCTTCTTTTGCTTTGGGTGAAGAATTCTACTTGGGAGGAATCATAGGGGCGGTGCTGATTATATCGGGGCTGTACCTTGTTCTGTGGGGCAAGAGCGAAGAAAAGAAGCTCTTATTGGAAAGGGCAGTCATCCAGTCCGCCCCGGACCACGGTACCACCCGAACGACCATCCACATCAAGCCGTCGCTTAACCAGCCGCTTCTCCATCCTACGGCTGAAAATGTCTGA 1182 52.37 MADASSVSDKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFLEKRNRPALTLNFVLQFFLLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAIFRIEQVRLDRKDGIAKVVGTLCCVAGATVITLYKGPTIYSPTTTVTLQSTVATAGKLMGPGMFPSLGDAKGKSWTLGCIYLFGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLLQFLIIAVAFERDAQAWVFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAVMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKLLLERAVIQSAPDHGTTRTTIHIKPSLNQPLLHPTAENV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26042393 26046203 + Sed0017551.1 Sed11g1065 729711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1065 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 350 - -
Sed11g1065 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Sed11g1065 393 PANTHER WAT1-RELATED PROTEIN 24 358 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed11g1065 393 Pfam EamA-like transporter family 208 346 IPR000620 GO:0016020(InterPro)
Sed11g1065 393 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0381 Sed-Chr8:2303753 Sed11g1065 Sed-Chr11:26042393 4.50E-111 dispersed
Sed11g1065 Sed-Chr11:26042393 Sed12g1459 Sed-Chr12:14680027 3.20E-62 dispersed
Sed05g2398 Sed-Chr5:36380631 Sed11g1065 Sed-Chr11:26042393 9.80E-59 transposed
Sed11g1065 Sed-Chr11:26042393 Sed13g1605 Sed-Chr13:21247976 6.20E-159 wgd
Sed11g1065 Sed-Chr11:26042393 Sed03g1722 Sed-Chr3:11247621 6.00E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1065 - - - 0.0