Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1066 ATGTTTAAGGCTAAAAGATCCTCTAGTTCCCAAGCAAGTTCCAGAAAGGGCTGTATGAGAGGCAAAGGGGGCCCTGAAAATGCTTCTTGCACTTACAAGGGTGTTCGCCAGAGAACTTGGGGCAAATGGGTTGCCGAGATTCGCGAGCCGAATCGCGGGGCTCGGCTTTGGCTCGGTACCTTTGATACCTCCCATGATGCTGCCTTGGCTTATGACAATGCCGCCCGTCGCCTTTACGGCCCCGACGCGAAGCTCAATCTCCCTCACCTGTTTCTCCCTTCTTCCTCCTCTGCTTCTTCCTCCTCTGCTTCTTCTTCCTCTGTTTCCGAGGCGGCTACTCCGATGGCGGAAGCGGCAGAGCCTGAGAAGTGTGTGAAAAACATGAGTGGTGGATTTGGAGAGGAGGAAATGGGAGGGCTTTGGAGGCCTATGAGTATTAGTTTGGATGATTCTATTTGGGTTGAGGCTGCCATGTCTTTGGATTTTCCTGTCATGGAAAATCAGAGTGTTTTTCAGGCTAATTTGGTGGATGGGAATGGATGGGATTCAGTGCAATGGTGTTTATGA 567 50.97 MFKAKRSSSSQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGPDAKLNLPHLFLPSSSSASSSSASSSSVSEAATPMAEAAEPEKCVKNMSGGFGEEEMGGLWRPMSISLDDSIWVEAAMSLDFPVMENQSVFQANLVDGNGWDSVQWCL 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26050024 26050590 - Sed0027003.1 Sed11g1066 729712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1066 188 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677(InterPro)
Sed11g1066 188 SMART rav1_2 31 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1066 188 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1066 188 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1066 188 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1066 188 MobiDBLite consensus disorder prediction 1 16 - -
Sed11g1066 188 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Sed11g1066 188 MobiDBLite consensus disorder prediction 95 112 - -
Sed11g1066 188 CDD AP2 30 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1066 188 MobiDBLite consensus disorder prediction 95 120 - -
Sed11g1066 188 Pfam AP2 domain 32 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1066 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 119 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Sed11g1066 188 MobiDBLite consensus disorder prediction 1 30 - -
Sed11g1066 188 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1066 Sed-Chr11:26050024 Sed11g2140 Sed-Chr11:35265437 3.40E-30 dispersed
Sed12g1228 Sed-Chr12:8633561 Sed11g1066 Sed-Chr11:26050024 1.40E-28 transposed
Sed01g2523 Sed-Chr1:18865626 Sed11g1066 Sed-Chr11:26050024 8.40E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39954 PF00847 AP2 1.80E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1066 - - - 0.0