Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1066 | ATGTTTAAGGCTAAAAGATCCTCTAGTTCCCAAGCAAGTTCCAGAAAGGGCTGTATGAGAGGCAAAGGGGGCCCTGAAAATGCTTCTTGCACTTACAAGGGTGTTCGCCAGAGAACTTGGGGCAAATGGGTTGCCGAGATTCGCGAGCCGAATCGCGGGGCTCGGCTTTGGCTCGGTACCTTTGATACCTCCCATGATGCTGCCTTGGCTTATGACAATGCCGCCCGTCGCCTTTACGGCCCCGACGCGAAGCTCAATCTCCCTCACCTGTTTCTCCCTTCTTCCTCCTCTGCTTCTTCCTCCTCTGCTTCTTCTTCCTCTGTTTCCGAGGCGGCTACTCCGATGGCGGAAGCGGCAGAGCCTGAGAAGTGTGTGAAAAACATGAGTGGTGGATTTGGAGAGGAGGAAATGGGAGGGCTTTGGAGGCCTATGAGTATTAGTTTGGATGATTCTATTTGGGTTGAGGCTGCCATGTCTTTGGATTTTCCTGTCATGGAAAATCAGAGTGTTTTTCAGGCTAATTTGGTGGATGGGAATGGATGGGATTCAGTGCAATGGTGTTTATGA | 567 | 50.97 | MFKAKRSSSSQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGPDAKLNLPHLFLPSSSSASSSSASSSSVSEAATPMAEAAEPEKCVKNMSGGFGEEEMGGLWRPMSISLDDSIWVEAAMSLDFPVMENQSVFQANLVDGNGWDSVQWCL | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 26050024 | 26050590 | - | Sed0027003.1 | Sed11g1066 | 729712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1066 | 188 | SUPERFAMILY | DNA-binding domain | 31 | 89 | IPR016177 | GO:0003677(InterPro) | |
Sed11g1066 | 188 | SMART | rav1_2 | 31 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1066 | 188 | Gene3D | AP2/ERF domain | 31 | 89 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1066 | 188 | PRINTS | Ethylene responsive element binding protein signature | 32 | 43 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1066 | 188 | PRINTS | Ethylene responsive element binding protein signature | 54 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1066 | 188 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Sed11g1066 | 188 | FunFam | Ethylene-responsive transcription factor 2 | 30 | 89 | - | - | |
Sed11g1066 | 188 | MobiDBLite | consensus disorder prediction | 95 | 112 | - | - | |
Sed11g1066 | 188 | CDD | AP2 | 30 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1066 | 188 | MobiDBLite | consensus disorder prediction | 95 | 120 | - | - | |
Sed11g1066 | 188 | Pfam | AP2 domain | 32 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1066 | 188 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 119 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Sed11g1066 | 188 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Sed11g1066 | 188 | ProSiteProfiles | AP2/ERF domain profile. | 31 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1066 | Sed-Chr11:26050024 | Sed11g2140 | Sed-Chr11:35265437 | 3.40E-30 | dispersed | |
Sed12g1228 | Sed-Chr12:8633561 | Sed11g1066 | Sed-Chr11:26050024 | 1.40E-28 | transposed | |
Sed01g2523 | Sed-Chr1:18865626 | Sed11g1066 | Sed-Chr11:26050024 | 8.40E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39954 | PF00847 | AP2 | 1.80E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1066 | - | - | - | 0.0 |