Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1067 ATGGCTGGGTTCTTCTATGTAGGAGGTAGAGAAACCCTACCCAGCAAACAAGAAGAGGATGAAGAACAACAACAACAACATCAAAGAGAACACAGCTTGTTTATGTGCAGAAACAATGAAGAGATCTACAACAACAACAACACCAACAAGGGTTTTGAGATATGGCCTCCCCAATATCACCACCAAAACCCTACTCTCCCGAATCACTTGTCCTTCGCCCTCGGCCCCGCCCGCCGCGGCGGCTTCTCCATGAACGAATTACCCAACGACCCCTCCGGATCCCCCTTCACCCTCATGACCCCCGCTGCCTTCTCCGCCGCCGCCACCGCTTCCTCGGGGGGCGTCAATTGCCAGGACTGTGGCAACCAAGCCAAGAAGGATTGTGCCTACTTGCGGTGTAGGACTTGCTGCAAGAGCCGCGGGTTTCACTGCCAGACCCACGTGAAGAGCACGTGGGTTCCGGCTGCCAAACGCCGCGAGCGCCAGCAGCAAATTGCTGCCTTGCACCAGCAGGAGCAGTTTCGCTGCAGCGACAATTCTAAAAGACTCAAAGAAACCCAAATCTCCGCCATCGCTTCCGCCGTCGTCACTTGCCCTCGTTTTCCCTCCACCACCACCACCACAGGGTTAGAAATGTCGCAATTTCCATCAGAAGTGAACTCATCGGCGGTATTTCGTTGCGTAAAAGTAAGCGCAATGGACGACGCAGATGAAGAGTTTGCATATCAAACGGCTGTGAACATCGGAGGCCACATGTTCAAAGGAATTCTCTACGATCAAGGCCCAGAAATCCGTTACACCGCTGCCGACGACAGCTCCTCCGGCCACGGCGGAGACGGATCAGCACACCCACTTAACCTAATTGCCGGATCCTCAAACGCCGCCGCCTCCTCTTCCGCCGCAACGAGTACCGACCCCGCCGCAGCCGCTCCGATGCTGGATCCTTCTTTATATCCAGCTCCCCTCAATGCATTTATGGTTGGTACGCAGTTCTTCCCATCCTCAAGGTCATGA 1014 54.83 MAGFFYVGGRETLPSKQEEDEEQQQQHQREHSLFMCRNNEEIYNNNNTNKGFEIWPPQYHHQNPTLPNHLSFALGPARRGGFSMNELPNDPSGSPFTLMTPAAFSAAATASSGGVNCQDCGNQAKKDCAYLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQIAALHQQEQFRCSDNSKRLKETQISAIASAVVTCPRFPSTTTTTGLEMSQFPSEVNSSAVFRCVKVSAMDDADEEFAYQTAVNIGGHMFKGILYDQGPEIRYTAADDSSSGHGGDGSAHPLNLIAGSSNAAASSSAATSTDPAAAAPMLDPSLYPAPLNAFMVGTQFFPSSRS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26122032 26123472 - Sed0011373.1 Sed11g1067 729713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1067 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 331 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Sed11g1067 337 Pfam Domain of unknown function (DUF702) 114 263 - -
Sed11g1067 337 NCBIfam LRP1 C-terminal domain 214 262 IPR006511 -
Sed11g1067 337 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Sed11g1067 337 MobiDBLite consensus disorder prediction 1 30 - -
Sed11g1067 337 MobiDBLite consensus disorder prediction 13 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2520 Sed-Chr1:18852440 Sed11g1067 Sed-Chr11:26122032 2.00E-64 wgd
Sed10g0971 Sed-Chr10:7959052 Sed11g1067 Sed-Chr11:26122032 6.00E-56 wgd
Sed11g1067 Sed-Chr11:26122032 Sed14g1169 Sed-Chr14:21046792 4.70E-62 wgd
Sed11g1067 Sed-Chr11:26122032 Sed03g1718 Sed-Chr3:11188167 3.90E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39955 PF05142 DUF702 1.80E-63 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1067 K27807 - csv:101213154 428.328