Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1067 | ATGGCTGGGTTCTTCTATGTAGGAGGTAGAGAAACCCTACCCAGCAAACAAGAAGAGGATGAAGAACAACAACAACAACATCAAAGAGAACACAGCTTGTTTATGTGCAGAAACAATGAAGAGATCTACAACAACAACAACACCAACAAGGGTTTTGAGATATGGCCTCCCCAATATCACCACCAAAACCCTACTCTCCCGAATCACTTGTCCTTCGCCCTCGGCCCCGCCCGCCGCGGCGGCTTCTCCATGAACGAATTACCCAACGACCCCTCCGGATCCCCCTTCACCCTCATGACCCCCGCTGCCTTCTCCGCCGCCGCCACCGCTTCCTCGGGGGGCGTCAATTGCCAGGACTGTGGCAACCAAGCCAAGAAGGATTGTGCCTACTTGCGGTGTAGGACTTGCTGCAAGAGCCGCGGGTTTCACTGCCAGACCCACGTGAAGAGCACGTGGGTTCCGGCTGCCAAACGCCGCGAGCGCCAGCAGCAAATTGCTGCCTTGCACCAGCAGGAGCAGTTTCGCTGCAGCGACAATTCTAAAAGACTCAAAGAAACCCAAATCTCCGCCATCGCTTCCGCCGTCGTCACTTGCCCTCGTTTTCCCTCCACCACCACCACCACAGGGTTAGAAATGTCGCAATTTCCATCAGAAGTGAACTCATCGGCGGTATTTCGTTGCGTAAAAGTAAGCGCAATGGACGACGCAGATGAAGAGTTTGCATATCAAACGGCTGTGAACATCGGAGGCCACATGTTCAAAGGAATTCTCTACGATCAAGGCCCAGAAATCCGTTACACCGCTGCCGACGACAGCTCCTCCGGCCACGGCGGAGACGGATCAGCACACCCACTTAACCTAATTGCCGGATCCTCAAACGCCGCCGCCTCCTCTTCCGCCGCAACGAGTACCGACCCCGCCGCAGCCGCTCCGATGCTGGATCCTTCTTTATATCCAGCTCCCCTCAATGCATTTATGGTTGGTACGCAGTTCTTCCCATCCTCAAGGTCATGA | 1014 | 54.83 | MAGFFYVGGRETLPSKQEEDEEQQQQHQREHSLFMCRNNEEIYNNNNTNKGFEIWPPQYHHQNPTLPNHLSFALGPARRGGFSMNELPNDPSGSPFTLMTPAAFSAAATASSGGVNCQDCGNQAKKDCAYLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQIAALHQQEQFRCSDNSKRLKETQISAIASAVVTCPRFPSTTTTTGLEMSQFPSEVNSSAVFRCVKVSAMDDADEEFAYQTAVNIGGHMFKGILYDQGPEIRYTAADDSSSGHGGDGSAHPLNLIAGSSNAAASSSAATSTDPAAAAPMLDPSLYPAPLNAFMVGTQFFPSSRS | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 26122032 | 26123472 | - | Sed0011373.1 | Sed11g1067 | 729713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1067 | 337 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 331 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Sed11g1067 | 337 | Pfam | Domain of unknown function (DUF702) | 114 | 263 | - | - | |
Sed11g1067 | 337 | NCBIfam | LRP1 C-terminal domain | 214 | 262 | IPR006511 | - | |
Sed11g1067 | 337 | NCBIfam | putative zinc finger domain, LRP1 type | 116 | 158 | IPR006510 | - | |
Sed11g1067 | 337 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Sed11g1067 | 337 | MobiDBLite | consensus disorder prediction | 13 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2520 | Sed-Chr1:18852440 | Sed11g1067 | Sed-Chr11:26122032 | 2.00E-64 | wgd | |
Sed10g0971 | Sed-Chr10:7959052 | Sed11g1067 | Sed-Chr11:26122032 | 6.00E-56 | wgd | |
Sed11g1067 | Sed-Chr11:26122032 | Sed14g1169 | Sed-Chr14:21046792 | 4.70E-62 | wgd | |
Sed11g1067 | Sed-Chr11:26122032 | Sed03g1718 | Sed-Chr3:11188167 | 3.90E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39955 | PF05142 | DUF702 | 1.80E-63 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1067 | K27807 | - | csv:101213154 | 428.328 |