Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1092 ATGGCGGCACGTACTTCATTCCTCTTCGGTCTTTCAATTCTGCTGCTGTTGGTGCCAGATGTGTTTTCGACGAGCTTTACTTTTTTAAACAAATGTGAATTCACGGTCTGGCCGGGCGTTTTGTCGAACGGCGGCGTTCCGCCGCTTCCCGTCACCGGCTTCTCTCTCCAAACCGGAGAGTCCAAGACACTGCCGGCGCCGGCGTCTTGGGGAGGCCGGTTCTGGGGCCGAACGCTCTGTTCCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGACTGCGGCTCCAACAAACTCGAGTGCGCCGGGAACGGAGCGACGCCGCCGGCGACTCTCGCGGAGTTCACTTTGGACGGCTCCGGAGGGCTTGATTTCTTCGACGTCAGCCTGGTGGACGGCTACAATCTGCCGATGATGGTGGTGCCTCAGGGCGGGTCCGGCAGCAACTGCTCCAGCACCGGCTGCGTGGTGGATCTGAACGGCGCGTGCCCGTCGGAGCTGCGCGTGACGAGCGCCGACGGGAGCGATGGCGTGGCGTGTAAGAGCGCGTGCGAGGCTTTCAACCAACCGCAGTATTGCTGCACGGGCGCGTATCAGACACCGGACACGTGTCAGCCGTCGATGTATTCCCAGATCTTCAAGAGAGCGTGCCCACGCGCTTATAGCTACGCGTACGATGACAAGACCAGCACTTTCACATGCGCCGGGGGTGATTACGTCATCACCTTCTGTCCGTCGCCTAACACCAGTCAAAAGTCATCGGAGGCAAAGAATTCACCGGCGACGGCGAACCCATCCGCCGGCAGCGACGGTGGGATGGTATACGAAGGCGGATCCCTGATCCAAACAGACGCAGCGCCGCCGCGGTTGGCCGGAATATCAGTGGTAGGTGCGGTGGCGATCGGTTGGTTGTGGCAGCACCTGTTCTTTTATGGCCTAAGTCCATAG 951 60.36 MAARTSFLFGLSILLLLVPDVFSTSFTFLNKCEFTVWPGVLSNGGVPPLPVTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFTCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGSNCSSTGCVVDLNGACPSELRVTSADGSDGVACKSACEAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCAGGDYVITFCPSPNTSQKSSEAKNSPATANPSAGSDGGMVYEGGSLIQTDAAPPRLAGISVVGAVAIGWLWQHLFFYGLSP 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26594580 26597291 + Sed0014411.1 Sed11g1092 729738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1092 316 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Sed11g1092 316 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Sed11g1092 316 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Sed11g1092 316 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Sed11g1092 316 SUPERFAMILY Osmotin, thaumatin-like protein 25 247 IPR037176 -
Sed11g1092 316 Gene3D Thaumatin 24 246 IPR037176 -
Sed11g1092 316 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Sed11g1092 316 PANTHER OS03G0233200 PROTEIN 13 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed11g1092 316 MobiDBLite consensus disorder prediction 251 267 - -
Sed11g1092 316 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Sed11g1092 316 SMART tha2 26 246 IPR001938 -
Sed11g1092 316 Pfam Thaumatin family 30 246 IPR001938 -
Sed11g1092 316 MobiDBLite consensus disorder prediction 251 270 - -
Sed11g1092 316 CDD TLP-PA 25 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3598 Sed-Chr5:44399214 Sed11g1092 Sed-Chr11:26594580 1.40E-99 dispersed
Sed05g3599 Sed-Chr5:44399214 Sed11g1092 Sed-Chr11:26594580 9.70E-97 dispersed
Sed11g1092 Sed-Chr11:26594580 Sed11g1094 Sed-Chr11:26594580 6.30E-178 dispersed
Sed11g1092 Sed-Chr11:26594580 Sed11g1093 Sed-Chr11:26594580 6.30E-178 tandem
Sed13g0008 Sed-Chr13:55953 Sed11g1092 Sed-Chr11:26594580 6.40E-79 transposed
Sed01g2481 Sed-Chr1:18564854 Sed11g1092 Sed-Chr11:26594580 2.00E-115 wgd
Sed10g1004 Sed-Chr10:8748061 Sed11g1092 Sed-Chr11:26594580 5.00E-85 wgd
Sed11g1092 Sed-Chr11:26594580 Sed13g1561 Sed-Chr13:20815333 8.40E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1092 - - - 0.0