Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1093 ATGTGGGTTTTTTTTTATTTGTTGTGCTTTGTTTTTGGATTTTCAGATGTGTTTTCGACGAGCTTTACTTTTTTAAACAAATGTGAATTCACGGTCTGGCCGGGCGTTTTGTCGAACGGCGGCGTTCCGCCGCTTCCCGTCACCGGCTTCTCTCTCCAAACCGGAGAGTCCAAGACACTGCCGGCGCCGGCGTCTTGGGGAGGCCGGTTCTGGGGCCGAACGCTCTGTTCCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGACTGCGGCTCCAACAAACTCGAGTGCGCCGGGAACGGAGCGACGCCGCCGGCGACTCTCGCGGAGTTCACTTTGGACGGCTCCGGAGGGCTTGATTTCTTCGACGTCAGCCTGGTGGACGGCTACAATCTGCCGATGATGGTGGTGCCTCAGGGCGGGTCCGGCAGCAACTGCTCCAGCACCGGCTGCGTGGTGGATCTGAACGGCGCGTGCCCGTCGGAGCTGCGCGTGACGAGCGCCGACGGGAGCGATGGCGTGGCGTGTAAGAGCGCGTGCGAGGCTTTCAACCAACCGCAGTATTGCTGCACGGGCGCGTATCAGACACCGGACACGTGTCAGCCGTCGATGTATTCCCAGATCTTCAAGAGAGCGTGCCCACGCGCTTATAGCTACGCGTACGATGACAAGACCAGCACTTTCACATGCGCCGGGGGTGATTACGTCATCACCTTCTGTCCGTCGCCTAACACCAGTCAAAAGTCATCGGAGGCAAAGAATTCACCGGCGACGGCGAACCCATCCGCCGGCAGCGACGGTGGGATGGTATACGAAGGCGGATCCCTGATCCAAACAGACGCAGCGCCGCCGCGGTTGGCCGGAATATCAGTGGTAGGTGCGGTGGCGATCGGTTGGTTGTGGCAGCACCTGTTCTTTTATGGCCTAAGTCCATAG 939 59.32 MWVFFYLLCFVFGFSDVFSTSFTFLNKCEFTVWPGVLSNGGVPPLPVTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFTCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGSNCSSTGCVVDLNGACPSELRVTSADGSDGVACKSACEAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCAGGDYVITFCPSPNTSQKSSEAKNSPATANPSAGSDGGMVYEGGSLIQTDAAPPRLAGISVVGAVAIGWLWQHLFFYGLSP 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26594580 26597291 + Sed0014411.2 Sed11g1093 729739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1093 312 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Sed11g1093 312 PRINTS Pathogenesis-related protein signature 21 33 IPR001938 -
Sed11g1093 312 PRINTS Pathogenesis-related protein signature 121 137 IPR001938 -
Sed11g1093 312 PRINTS Pathogenesis-related protein signature 69 80 IPR001938 -
Sed11g1093 312 FunFam THAUMATIN-LIKE PROTEIN 1 20 242 - -
Sed11g1093 312 PANTHER OS03G0233200 PROTEIN 6 242 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed11g1093 312 Gene3D Thaumatin 20 242 IPR037176 -
Sed11g1093 312 ProSiteProfiles Thaumatin family profile. 19 242 IPR001938 -
Sed11g1093 312 PIRSF PR5 1 273 IPR001938 -
Sed11g1093 312 SMART tha2 22 242 IPR001938 -
Sed11g1093 312 MobiDBLite consensus disorder prediction 247 263 - -
Sed11g1093 312 Pfam Thaumatin family 26 242 IPR001938 -
Sed11g1093 312 SUPERFAMILY Osmotin, thaumatin-like protein 21 243 IPR037176 -
Sed11g1093 312 CDD TLP-PA 21 241 - -
Sed11g1093 312 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1403 Sed-Chr4:28529206 Sed11g1093 Sed-Chr11:26594580 9.40E-65 dispersed
Sed10g1317 Sed-Chr10:28794843 Sed11g1093 Sed-Chr11:26594580 7.00E-68 dispersed
Sed11g1093 Sed-Chr11:26594580 Sed13g1561 Sed-Chr13:20815333 4.90E-114 dispersed
Sed11g1092 Sed-Chr11:26594580 Sed11g1093 Sed-Chr11:26594580 6.30E-178 tandem
Sed11g1093 Sed-Chr11:26594580 Sed11g1094 Sed-Chr11:26594580 2.80E-186 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1093 - - - 0.0