Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1104 ATGGCGAAACTCCCTTTCGCTTTCGCTCTCGCTCTTCTACTCTGCAACTTCTTCTTTGCTGCCAATGCATTTACCGCATCGGGGTTCAGTCCCGCTCACGCTACTTTTTATGGCGGTAGCGATGCTTCGGGAACCATGGGCGGAGCTTGTGGGTACGGGGACTTATACCAGACGGGTTACGGGACTCGAACTGCAGCGCTGAGCACGGCGCTGTTCAACGACGGAGCCTCGTGCGGGCAGTGCTTCAAGATCATGTGCGATTACAAGACGGACCCACGGTGGTGCATCAAAGGAACCTCGGTCACAATCACAGCCACCAATTTCTGCCCACCAAACTACGCTTTGCCGAACAACAACGGCGGGTGGTGCAACCCTCCCCTCAAGCACTTCGACATGGCTCAGCCCGCTTGGGAAAAGATTGGTATCTATAGAGGTGGAATCATCCCAGTCCTCTACCAAAGAGTCCCGTGCGTGAAGAAAGGAGGCGTGAGATTCACAGTAAACGGGCGAGACTATTTCGAGCTGGTCTTAATCAGCAACGTGGCAGGAGCAGGGGAGATCAGATCAGTTTCCATCAAGGGCTCCAAATCCAACACGTGGATGGCCATGTCCAGGAATTGGGGAGCCAATTGGCAGTCAAATTCGTATCTAAATGGCCAATCTCTATCCTTCAAGGTCACCACGGCCGATGGCCAGACCCAAACCTTCAACAATGTGGTGCCATCGGGCTGGAGATTCGGCCAAACATTTGCCAGCAAGGTGCAGTTTAGCTGA 774 53.75 MAKLPFAFALALLLCNFFFAANAFTASGFSPAHATFYGGSDASGTMGGACGYGDLYQTGYGTRTAALSTALFNDGASCGQCFKIMCDYKTDPRWCIKGTSVTITATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISNVAGAGEIRSVSIKGSKSNTWMAMSRNWGANWQSNSYLNGQSLSFKVTTADGQTQTFNNVVPSGWRFGQTFASKVQFS 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26746562 26749117 + Sed0005532.1 Sed11g1104 729750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1104 257 PANTHER EXPANSIN-A15 10 253 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 CDD DPBB_EXPA_N 28 157 - -
Sed11g1104 257 FunFam Expansin 19 158 - -
Sed11g1104 257 FunFam Expansin 162 256 - -
Sed11g1104 257 Gene3D - 18 157 IPR036908 -
Sed11g1104 257 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
Sed11g1104 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Sed11g1104 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Sed11g1104 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Sed11g1104 257 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Sed11g1104 257 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Sed11g1104 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Sed11g1104 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Sed11g1104 257 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Sed11g1104 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Sed11g1104 257 SMART dpbb_1 64 152 IPR007112 -
Sed11g1104 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Sed11g1104 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Sed11g1104 257 Pfam Lytic transglycolase 64 152 IPR009009 -
Sed11g1104 257 Gene3D - 162 257 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1869 Sed-Chr7:29027593 Sed11g1104 Sed-Chr11:26746562 3.40E-73 dispersed
Sed11g1104 Sed-Chr11:26746562 Sed11g2112 Sed-Chr11:35050955 6.20E-91 dispersed
Sed11g1104 Sed-Chr11:26746562 Sed06g1515 Sed-Chr6:39836514 1.90E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1104 - - - 0.0