Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1105 ATGTCTTTCCTCACCTTTCTTCTCCTCTTTTCTTCCTTCCTTTTCCCCTCTCTCAATGCCTTGACCCACAACTACTACGACCACTCGTGCCCCGACCTCGAGTCCATCGTTGCCCGACAAGTCCACCTGGCCACCCTCAACGACAAGACCGTCCCTGCCGCGTTGCTCCGAATGCACTTCCATGACTGTTTCATTAGAGGTTGTGATGGCTCTGTGCTTCTTGACTCCAAGGGGAAGAACACTGCTGAAAAAGATGGTCCTCCTAATATATCATTGCATGCTTTTTATGTCATTGACAATGCCAAGAAAGCCATTGAATCCGCTTGCCCCGGCGTCGTTTCTTGTGCTGATATTTTGGCCCTCGCTGCTCGCGATGCTGTTGCTTTGTCTGGAGGTCCTCATTGGAAAGTCCCAAAAGGAAGAAAAGATGGAAGAATCTCCAAAGCAATTGAAACTAGACAATTGCCTGCTCCCACTTTCAACTTCTCTCAACTCCAACAAAATTTTGCCCAAAGAGGCCTCTCTATTCAAGATCTAGTAGCTCTTTCAGGCGGGCACACGCTAGGATTCGCCCACTGCTCGTCATTCCAAAACAGAATCCACAACTTCAGCTCGACCCTCGACGTCGACCCGTCGCTGCAGCCGTCGTTCGCAGCCAGCCTCCGGAGCATATGCCCGGCTCACAACAAGGTGAAAATCGCCGGGTCGGGCTTGGATTCAAGCTCCACATTATTTGACAATGCATATTTCAAGCTGCTTCTTCAAGGGCAGAGCATTTTCACATCAGATCAATCTTTGCTTTCAAATCACAATACAAAGGCTTTGGTCTCTAAGTTCGCCGCTGAGCAACAGCTCTTTGAGAAGGCTTTTGTGAAGTCTATGATCAAGATGAGCCTCATCGCCGGCGCCGGAGAAGAAGTCCGGCTGAACTGCAGGGTGGTCAGATGA 948 49.79 MSFLTFLLLFSSFLFPSLNALTHNYYDHSCPDLESIVARQVHLATLNDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESACPGVVSCADILALAARDAVALSGGPHWKVPKGRKDGRISKAIETRQLPAPTFNFSQLQQNFAQRGLSIQDLVALSGGHTLGFAHCSSFQNRIHNFSSTLDVDPSLQPSFAASLRSICPAHNKVKIAGSGLDSSSTLFDNAYFKLLLQGQSIFTSDQSLLSNHNTKALVSKFAAEQQLFEKAFVKSMIKMSLIAGAGEEVRLNCRVVR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26759992 26762092 + Sed0015556.1 Sed11g1105 729751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1105 315 Pfam Peroxidase 39 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 Gene3D Peroxidase, domain 2 156 297 - -
Sed11g1105 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Sed11g1105 315 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 FunFam Peroxidase 156 297 - -
Sed11g1105 315 SUPERFAMILY Heme-dependent peroxidases 21 314 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 ProSiteProfiles Plant heme peroxidase family profile. 20 315 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g1105 315 FunFam Peroxidase 24 163 - -
Sed11g1105 315 CDD secretory_peroxidase 21 314 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed11g1105 315 PANTHER PEROXIDASE 25-RELATED 22 311 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed11g1105 315 Gene3D - 24 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1329 Sed-Chr9:37422884 Sed11g1105 Sed-Chr11:26759992 1.00E-60 dispersed
Sed11g1105 Sed-Chr11:26759992 Sed13g0179 Sed-Chr13:1167711 2.00E-91 dispersed
Sed10g1022 Sed-Chr10:8895536 Sed11g1105 Sed-Chr11:26759992 4.20E-113 wgd
Sed11g1105 Sed-Chr11:26759992 Sed14g1212 Sed-Chr14:21362100 6.20E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1105 K00430 - csv:101214403 531.946