Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1112 ATGAGCGGTTGCGATGCGGAGCCGTTGGTTTACGTTCACGGTGACCTTGATTTGAGGATCATTGAGGCGCGTCGTTTGCCTAATATGGATTTGTTTTCGGAGCGCATTCGGCGGTTTTGTACTGCTTTTAATTCTTGTCGTAAGCCGTTTTCGAGCAAGGATTCCGATCGCCAGCACCACGGGAAGATTATTACTAGCGATCCTTATGTCACCGTTTGTCTCGCCGGAGCCAGGGTTGCTCGAACGCGAGTAATTTCGAACTCGCAGAACCCTGTCTGGAACGAGCATTTTAAAATTCCTCTTGCTCATCCGATCTCGCAGGTGGAGTTTCATGTGAAGGATGATGATTTGTTTGGTGCGGATTTGATCGGCATTGCTACGGTCCCTGCGCATAGAGTTTTATCCGGCGAAACCATAAACGATTGGTTTCCAATTATTGGTTCGTTCGGGAAACCACCGAAACCGGATTGTGCTGTGCGTTTGGAAATGAAGTTCACCAAATGTGAGGACAATCCTCTTTATAGATATGGCATTGCGGCCGATCCAGAACATTTCGGTGTTCGGAATTGCTATTTTCCGGTGCGACGTGGGGGTTCGGTAACTCTTTATCAGGACGCGCACGTTAATGATTCTGTGTTGGAGAAGATTGAAATGGAAAACGGGAATGCGTTTCAACATGAGAATTGCTGGGAGGATATATGCCATGCCATTTTGGAGGCTCACCATTTAGTCTACATTGCTGGTTGGTCTATATATCATAAAGTGAAGCTGGTGCGAGAGCCTTCGAAGCCGTTGCCGAATGGTGGGAATTTGAACTTGGGAGAGTTGCTCAAGTATAAGTCACAAGAAGGGGTGCGAGTATTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATCAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCATTCTTCTGTGTCATGTGTGTTGTCGCCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAGCAGGTTGTTGGAACCCTTTTTACTCATCACCAGAAGTGTGTGATTGTGGATACTCTAGCATCTGGAAATTACAGGAAGATAAGTGCTTTTATTGGAGGACTTGACCTTTGCGATGGTCGTTATGATACTCCTGAACATCGGTTATCAAAAGATCTTGACACTGTATTTGAGGGTGATTTTCATAATCCAACTTTTACGGGAGGTACAAAGGCTCCTCGGGAGCCTTGGCATGATTTACATTGCAAACTTGAAGGGCCTGCTGCATATGATGTGCTTACCAACTTCGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAAATAGGTCAGCGGTTCAAAAGAGTGTCGCATTGCCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTAAGTCAGTCCCCAACGATGATCCATTGTTATGGGTTTCCAAGGAAAATGATCCTGACAATTGGCATGTGCAGGTTTTCCGATCCATAGATTCAGGATCTTTGAGAGGATTTCCCAAAGATAATTTTCAAGCTGAGTTGCAGAATCTTGTTTGTGCAAAAAACATGGTTATTGACCAAAGTATTCAAACAGCATACATTCAAGCAATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTATTGGATCTTCGTTTGCATGGCCTTCATACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGCGTTGAAAATTGCTAGTAAGATTATAGCCAATGAGAGGTTTGCTGTGTACGTTGTGCTACCTATGTGGCCTGAAGGTGCTCCCACTTCTGTTTCTGTGCAAGAAATCCTTTTTTGGCAGAGCCAAACAATCCAAATGATGTATACAGTCATTGCAAGAGAGTTGAAATATAAGAATATCGAGAATGCTCATCCCTTGGACTACTTAAACTTTTACTGTCTTGGCAATCGGGAACCGCACGAGGACGTATCATGCTCCGATCATTCTTCTAAGGGCGAAGAGATGGTTTCTGACTCACAAAAGTACCGTAGATTCATGATATATGTACATGCCAAAGGAATGGTTGTTGATGATGAGTATGTAATAGTAGGGTCTGCAAATATAAACCAAAGATCAATGGATGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCTAGTTACACTTGGGGTACGAAGAAACGACATCCACGAGGCCAGGTTTATGGCTATAGAATGTCACTCTGGGCTGAACATTTGGGAGAGATTGAGGATTGCTTCAAGGAGCCTGAAAGTTTGGCTTGTGTGAACACTGTCAATAACATAGCTGAAGATAACTGGAAGAAATACACAGCAGTAGAATTTTCACCAATGCAAGGGCACCTCCTTAAGTACCCGATCGCCGTCAGCCAAAGTGGCAAGATTAGTCCGTTAAGCGGGCACACGAATTTTCCCGACGTTGGTGGTAAGGTCCTTGGAGCTCGATCTAACCTCCCTGATGCTCTTACTACATAA 2535 44.06 MSGCDAEPLVYVHGDLDLRIIEARRLPNMDLFSERIRRFCTAFNSCRKPFSSKDSDRQHHGKIITSDPYVTVCLAGARVARTRVISNSQNPVWNEHFKIPLAHPISQVEFHVKDDDLFGADLIGIATVPAHRVLSGETINDWFPIIGSFGKPPKPDCAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRRGGSVTLYQDAHVNDSVLEKIEMENGNAFQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTLASGNYRKISAFIGGLDLCDGRYDTPEHRLSKDLDTVFEGDFHNPTFTGGTKAPREPWHDLHCKLEGPAAYDVLTNFEQRWRKATKWSEIGQRFKRVSHCHEDALIKLERISWILSPSKSVPNDDPLLWVSKENDPDNWHVQVFRSIDSGSLRGFPKDNFQAELQNLVCAKNMVIDQSIQTAYIQAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIASKIIANERFAVYVVLPMWPEGAPTSVSVQEILFWQSQTIQMMYTVIARELKYKNIENAHPLDYLNFYCLGNREPHEDVSCSDHSSKGEEMVSDSQKYRRFMIYVHAKGMVVDDEYVIVGSANINQRSMDGSRDTEIAMGAYQPSYTWGTKKRHPRGQVYGYRMSLWAEHLGEIEDCFKEPESLACVNTVNNIAEDNWKKYTAVEFSPMQGHLLKYPIAVSQSGKISPLSGHTNFPDVGGKVLGARSNLPDALTT 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26832157 26838502 + Sed0012347.1 Sed11g1112 729758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1112 844 SMART pld_4 348 383 IPR001736 GO:0003824(InterPro)
Sed11g1112 844 SMART pld_4 690 717 IPR001736 GO:0003824(InterPro)
Sed11g1112 844 CDD C2_plant_PLD 10 166 - -
Sed11g1112 844 Gene3D C2 domain 12 173 IPR035892 -
Sed11g1112 844 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Sed11g1112 844 Gene3D Endonuclease Chain A 513 736 - -
Sed11g1112 844 SUPERFAMILY Phospholipase D/nuclease 537 776 - -
Sed11g1112 844 Pfam Phospholipase D C terminal 764 834 IPR024632 -
Sed11g1112 844 Pfam C2 domain 15 144 IPR000008 -
Sed11g1112 844 Gene3D Endonuclease Chain A 210 467 - -
Sed11g1112 844 PIRSF PLD_plant 1 844 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed11g1112 844 SMART C2_3c 15 142 IPR000008 -
Sed11g1112 844 Pfam Phospholipase D Active site motif 692 717 IPR001736 GO:0003824(InterPro)
Sed11g1112 844 SUPERFAMILY Phospholipase D/nuclease 216 450 - -
Sed11g1112 844 FunFam Phospholipase D delta 220 463 - -
Sed11g1112 844 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 166 IPR035892 -
Sed11g1112 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 690 717 IPR001736 GO:0003824(InterPro)
Sed11g1112 844 PANTHER PHOSPHOLIPASE D 11 832 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed11g1112 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 348 383 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2146 Sed-Chr7:37030639 Sed11g1112 Sed-Chr11:26832157 3.00E-34 dispersed
Sed09g0097 Sed-Chr9:718036 Sed11g1112 Sed-Chr11:26832157 1.90E-266 dispersed
Sed09g0098 Sed-Chr9:721980 Sed11g1112 Sed-Chr11:26832157 2.70E-186 dispersed
Sed09g1494 Sed-Chr9:38679941 Sed11g1112 Sed-Chr11:26832157 5.00E-195 dispersed
Sed11g1112 Sed-Chr11:26832157 Sed11g1113 Sed-Chr11:26832157 0.00E+00 tandem
Sed10g1038 Sed-Chr10:9182269 Sed11g1112 Sed-Chr11:26832157 7.10E-273 wgd
Sed11g1112 Sed-Chr11:26832157 Sed14g1225 Sed-Chr14:21447685 0.00E+00 wgd
Sed11g1112 Sed-Chr11:26832157 Sed03g1669 Sed-Chr3:10783572 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1112 K01115 - csv:101213442 1553.11