Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1113 ATGAGCGGTTGCGATGCGGAGCCGTTGGTTTACGTTCACGGTGACCTTGATTTGAGGATCATTGAGGCGCGTCGTTTGCCTAATATGGATTTGTTTTCGGAGCGCATTCGGCGGTTTTGTACTGCTTTTAATTCTTGTCGTAAGCCGTTTTCGAGCAAGGATTCCGATCGCCAGCACCACGGGAAGATTATTACTAGCGATCCTTATGTCACCGTTTGTCTCGCCGGAGCCAGGGTTGCTCGAACGCGAGTAATTTCGAACTCGCAGAACCCTGTCTGGAACGAGCATTTTAAAATTCCTCTTGCTCATCCGATCTCGCAGGTGGAGTTTCATGTGAAGGATGATGATTTGTTTGGTGCGGATTTGATCGGCATTGCTACGGTCCCTGCGCATAGAGTTTTATCCGGCGAAACCATAAACGATTGGTTTCCAATTATTGGTTCGTTCGGGAAACCACCGAAACCGGATTGTGCTGTGCGTTTGGAAATGAAGTTCACCAAATGTGAGGACAATCCTCTTTATAGATATGGCATTGCGGCCGATCCAGAACATTTCGGTGTTCGGAATTGCTATTTTCCGGTGCGACGTGGGGGTTCGGTAACTCTTTATCAGGACGCGCACGTTAATGATTCTGTGTTGGAGAAGATTGAAATGGAAAACGGGAATGCGTTTCAACATGAGAATTGCTGGGAGGATATATGCCATGCCATTTTGGAGGCTCACCATTTAGTCTACATTGCTGGTTGGTCTATATATCATAAAGTGAAGCTGGTGCGAGAGCCTTCGAAGCCGTTGCCGAATGGTGGGAATTTGAACTTGGGAGAGTTGCTCAAGTATAAGTCACAAGAAGGGGTGCGAGTATTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATCAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCATTCTTCTGTGTCATGTGTGTTGTCGCCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAGCAGGTTGTTGGAACCCTTTTTACTCATCACCAGAAGTGTGTGATTGTGGATACTCTAGCATCTGGAAATTACAGGAAGATAAGTGCTTTTATTGGAGGACTTGACCTTTGCGATGGTCGTTATGATACTCCTGAACATCGGTTATCAAAAGATCTTGACACTGTATTTGAGGGTGATTTTCATAATCCAACTTTTACGGGAGGTACAAAGGCTCCTCGGGAGCCTTGGCATGATTTACATTGCAAACTTGAAGGGCCTGCTGCATATGATGTGCTTACCAACTTCGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAAATAGGTCAGCGGTTCAAAAGAGTGTCGCATTGCCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTAAGTCAGTCCCCAACGATGATCCATTGTTATGGGTTTCCAAGGAAAATGATCCTGACAATTGGCATGTGCAGGTTTTCCGATCCATAGATTCAGGATCTTTGAGAGGATTTCCCAAAGATAATTTTCAAGCTGAGTTGCAGAATCTTGTTTGTGCAAAAAACATGGTTATTGACCAAAGTATTCAAACAGCATACATTCAAGCAATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTATTGGATCTTCGTTTGCATGGCCTTCATACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGCGTTGAAAATTGCTAGTAAGATTATAGCCAATGAGAGGTTTGCTGTGTACGTTGTGCTACCTATGTGGCCTGAAGGTGCTCCCACTTCTGTTTCTGTGCAAGAAATCCTTTTTTGGCAGAGCCAAACAATCCAAATGATGTATACAGTCATTGCAAGAGAGTTGAAATATAAGAATATCGAGAATGCTCATCCCTTGGACTACTTAAACTTTTACTGTCTTGGCAATCGGGAACCGCACGAGGACGTATCATGCTCCGATCATTCTTCTAAGGGCGAAGAGATGGTTTCTGACTCACAAAAGTACCGTAGATTCATGATATATGTACATGCCAAAGGAATGGTTGTTGATGATGAGTATGTAATAGTAGGGTCTGCAAATATAAACCAAAGATCAATGGATGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCTAGTTACACTTGGGGTACGAAGAAACGACATCCACGAGGCCAGGTTCGGTCACAACTTTCTCCGATAGTTCGATGGATAAAAACCACCCTAACCTAA 2295 43.79 MSGCDAEPLVYVHGDLDLRIIEARRLPNMDLFSERIRRFCTAFNSCRKPFSSKDSDRQHHGKIITSDPYVTVCLAGARVARTRVISNSQNPVWNEHFKIPLAHPISQVEFHVKDDDLFGADLIGIATVPAHRVLSGETINDWFPIIGSFGKPPKPDCAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRRGGSVTLYQDAHVNDSVLEKIEMENGNAFQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTLASGNYRKISAFIGGLDLCDGRYDTPEHRLSKDLDTVFEGDFHNPTFTGGTKAPREPWHDLHCKLEGPAAYDVLTNFEQRWRKATKWSEIGQRFKRVSHCHEDALIKLERISWILSPSKSVPNDDPLLWVSKENDPDNWHVQVFRSIDSGSLRGFPKDNFQAELQNLVCAKNMVIDQSIQTAYIQAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIASKIIANERFAVYVVLPMWPEGAPTSVSVQEILFWQSQTIQMMYTVIARELKYKNIENAHPLDYLNFYCLGNREPHEDVSCSDHSSKGEEMVSDSQKYRRFMIYVHAKGMVVDDEYVIVGSANINQRSMDGSRDTEIAMGAYQPSYTWGTKKRHPRGQVRSQLSPIVRWIKTTLT 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26832157 26838502 + Sed0012347.2 Sed11g1113 729759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1113 764 PANTHER PHOSPHOLIPASE D 11 740 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed11g1113 764 Pfam C2 domain 15 144 IPR000008 -
Sed11g1113 764 PIRSF PLD_plant 1 754 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed11g1113 764 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 166 IPR035892 -
Sed11g1113 764 Gene3D Endonuclease Chain A 513 736 - -
Sed11g1113 764 SMART pld_4 348 383 IPR001736 GO:0003824(InterPro)
Sed11g1113 764 SMART pld_4 690 717 IPR001736 GO:0003824(InterPro)
Sed11g1113 764 CDD C2_plant_PLD 10 166 - -
Sed11g1113 764 Gene3D Endonuclease Chain A 210 467 - -
Sed11g1113 764 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Sed11g1113 764 FunFam Phospholipase D delta 220 463 - -
Sed11g1113 764 SMART C2_3c 15 142 IPR000008 -
Sed11g1113 764 Pfam Phospholipase D Active site motif 692 717 IPR001736 GO:0003824(InterPro)
Sed11g1113 764 Gene3D C2 domain 12 173 IPR035892 -
Sed11g1113 764 SUPERFAMILY Phospholipase D/nuclease 537 726 - -
Sed11g1113 764 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 690 717 IPR001736 GO:0003824(InterPro)
Sed11g1113 764 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 348 383 IPR001736 GO:0003824(InterPro)
Sed11g1113 764 SUPERFAMILY Phospholipase D/nuclease 215 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1669 Sed-Chr3:10783572 Sed11g1113 Sed-Chr11:26832157 0.00E+00 dispersed
Sed10g1038 Sed-Chr10:9182269 Sed11g1113 Sed-Chr11:26832157 2.00E-243 dispersed
Sed11g1113 Sed-Chr11:26832157 Sed14g1225 Sed-Chr14:21447685 4.70E-304 dispersed
Sed11g1112 Sed-Chr11:26832157 Sed11g1113 Sed-Chr11:26832157 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1113 K01115 - csv:101213442 1381.31