Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1121 ATGAGGAGAAGGGCGGGCTTGAGAGGACGTTGTTTTGGGGTGTTCGTGATCGTTATCGTCGTTAACATATTATCGGCCGTGGCGGTGGAGATGGCAGAGTTGAAGGAGAAAGAGGCGGTGGCCGGTCGGGTAGTGAAAGCGAAGGTGGGTGTGGTTTTGGATTTGAATGCTTTTGTAGGGAAGATGGGTGTGAGTTGCATTTCCATGGCTCTGGCTGATTTCTATGCTTCGCGGAGTGATTATAACACCAGGCTCATTCTCAACACCATGGACTCTAATGGCTCTGTTCTACGTGCAGCCGCTGCAGCTTTGGACTTGATAAAGAAAGAGGAGGTGCAAGCCATAATAGGGCCAACAAGTTCCATGCAAGCCAGCTTCATGATCGACCTTGGAGACAAAGCGCAGGTTCCCATCATCTCCTATTCAGCCACACAACCTTTCCTCACATCCCACCGCAGCCCTTTCTTCTTCCGAGTCGCCCAAAACGACTCGTCTCAAGTGAAAGCCATTGGAGCCATTGTCAGCGCCTTCAAATGGCGACGTGTAGTTCCCATCTATGTCAACAATGAGTTTGGTGAGGGAATCATACCTTACCTCGTCGATGCTCTACAAGAAGTCGATGCGCACGTGCCTTACCAGAGCGTAATTTCGCCGACGGCCACCGATGAGAAAGTAGGCCATGAACTTTACAAGCTCATGACAATGCAGACGAGAGTGTTTGTGGTGCATATGTTACCTCGCCATGCTTCTCGGCTCTTTGCTAAGGCTAACGAAATTGGAATGATGAAGCGAGGTTATGTTTGGATAGTCACAGATGCTATAACTAATGCATTGGATTTGATAGAACCTTCAACGTTGGAGTCGATGCAAGGAGTTCTAGGAATAAGAACTCACATCCCGAAAACGAAGAGCCTCGAGTCCTTCAAACTTGGATGGCGGAAGAGATTTCGTAGGTATTTTCCAACGGAAGAAGACTTTCCTGACCTCAACGTGTTTGGGCTATGGGCTTATGATGCAGCTTGGGCACTAGCCATGGCAGTGGAGAAGGCTGGAGTCGAAAACCTTAGGTACAACACCCCGGCCAACATTACCGCCATGGAAATGAACTCACCAAACTATTTATACAATCTCAGTGTGAATCAAAATGGTCCAAGGTTGCGAAACGCCTTCTCAAACATCAGGTTCAAGGGCTTAGCCGGCGATTTCGGTCTCGTGAATGGCCAGTTGAAATCGTCCGCCTTTGAGATAGTGAATTTGCTTGGTAATGGTCGAAGACATGTTGGGTTTTGGACACCAGAAGGTGGGCTAACAAGGAAACTGCAATATTCTGCAATGTCAAGTGGATTAAGATCGATCATCTGGCCAGGCGAGCCAAGTTCTGCTCCAAAAGGATGGGAGATTCCAACCAATGGGAAAAAGTTAAGAGTTGCAGTTCCGATGGGGCGCGTATTTAATGAATTTGTGTATGTGGGTCTTGATCCAAAAACAAATGAAACACAAGTGAGTGGATATTGCATAGATGTGTTCAAGGCTGTCATTGAAGCGTTGCCTTATGCTGTTGCTTATGAGTTCATTCCCATTGACACATCCAAATCAAAACTAGGTGCCAGCTACAATGACATGGCTTATCAGCTCTTCCTTGGGAAGTTCGATGTGTTGGTAGCTGATCTAACGATCCGAGCAAACAGGTCATTATACATAGATTACACATTGCCATTTACAGAATCTGGGGTGACAATGGTTGTGCCAATGAAGAGCACCAAGAACACCAATGCATGGGTGTACATAAAGCCTCTAACAGGGCAACTATGGGCACTAACAGGTGGTTTCTTCCTTATCATAGCACTTGTTGTTTGGATTTTGGAGCATCGAGTCAACCAAGACTTTAATGGAAAACCTTTTGATCAGTTCTGCAACAGCCTCTGGTACTCTTTCTCCACCATGGTTTTTGCCCAACGGGGGGTTACCTTCAACAACTGGACAAAATTGGTGGTGATAATATGGTTGTTTGTAGTCCTTGTCATCACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGCTTAAACCAACCGTAACTGATGTCAATCAGTTGATTAAAAATCGAGAAAGCATCGGGTTTCAAGGAGGTTCTTTCGTATATGAGATTTTAAAGTCGTTGAAGTTTGAAGATTTCCAGCTTAGAACTTATACAAGTCTAGAAGAAATGCATGAACTCTTTACCAAAGGAAGCATGAATGGCGGAATATCTGCTGCCTTGGATGAAACCCCTTACATTAAGTTATTCCTCGCCAAGTACTGCATGCAGTATACCACCACTGAACCCACCTTTAAAGCCGATGGTTTTGGTTTTGGTTTTCCAAGAGGTTCACCATTGGTACCGGATATATCGAGAGCGATCTTGCAAGTGACAGAAAGTAATAGAATGAGAGAGATCGAAAATACATGGTTTCATAAGATGAGAGACTGTTCGGCCCCAAAAGAGTTCGAGTTGTCTTCCACTCGACTCAGCGCCCAAAGCTTTTGGGGACTTTTCTTGATCCCGAGCGTTGTTTGCTTAGTCTCTTGCATCATTTACATTGGCAAGTTTGTGTATGATGACCCAATGTTTTGGCGAAATAGACGTGTTTCGATTTGGGTTAGAACTATTCGCTTGATTCGAAAGTTCATGCGTGCAGATAACAATTGTAATCGTATTGATCAAAGAAGAAACAGTTTTTAG 2733 45.04 MRRRAGLRGRCFGVFVIVIVVNILSAVAVEMAELKEKEAVAGRVVKAKVGVVLDLNAFVGKMGVSCISMALADFYASRSDYNTRLILNTMDSNGSVLRAAAAALDLIKKEEVQAIIGPTSSMQASFMIDLGDKAQVPIISYSATQPFLTSHRSPFFFRVAQNDSSQVKAIGAIVSAFKWRRVVPIYVNNEFGEGIIPYLVDALQEVDAHVPYQSVISPTATDEKVGHELYKLMTMQTRVFVVHMLPRHASRLFAKANEIGMMKRGYVWIVTDAITNALDLIEPSTLESMQGVLGIRTHIPKTKSLESFKLGWRKRFRRYFPTEEDFPDLNVFGLWAYDAAWALAMAVEKAGVENLRYNTPANITAMEMNSPNYLYNLSVNQNGPRLRNAFSNIRFKGLAGDFGLVNGQLKSSAFEIVNLLGNGRRHVGFWTPEGGLTRKLQYSAMSSGLRSIIWPGEPSSAPKGWEIPTNGKKLRVAVPMGRVFNEFVYVGLDPKTNETQVSGYCIDVFKAVIEALPYAVAYEFIPIDTSKSKLGASYNDMAYQLFLGKFDVLVADLTIRANRSLYIDYTLPFTESGVTMVVPMKSTKNTNAWVYIKPLTGQLWALTGGFFLIIALVVWILEHRVNQDFNGKPFDQFCNSLWYSFSTMVFAQRGVTFNNWTKLVVIIWLFVVLVITQSYTASLASLLTVQELKPTVTDVNQLIKNRESIGFQGGSFVYEILKSLKFEDFQLRTYTSLEEMHELFTKGSMNGGISAALDETPYIKLFLAKYCMQYTTTEPTFKADGFGFGFPRGSPLVPDISRAILQVTESNRMREIENTWFHKMRDCSAPKEFELSSTRLSAQSFWGLFLIPSVVCLVSCIIYIGKFVYDDPMFWRNRRVSIWVRTIRLIRKFMRADNNCNRIDQRRNSF 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26961754 26968469 + Sed0016123.1 Sed11g1121 729767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1121 910 FunFam Glutamate receptor 592 722 - -
Sed11g1121 910 SMART GluR_14 473 823 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed11g1121 910 CDD GluR_Plant 472 821 - -
Sed11g1121 910 Gene3D - 473 592 - -
Sed11g1121 910 Pfam Ligated ion channel L-glutamate- and glycine-binding site 496 583 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed11g1121 910 CDD PBP1_GABAb_receptor_plant 48 440 IPR044440 -
Sed11g1121 910 Gene3D - 361 472 - -
Sed11g1121 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 48 873 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed11g1121 910 Pfam Receptor family ligand binding region 67 420 IPR001828 -
Sed11g1121 910 Pfam Ligand-gated ion channel 602 852 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed11g1121 910 FunFam Glutamate receptor 473 592 - -
Sed11g1121 910 Gene3D - 593 724 - -
Sed11g1121 910 Gene3D - 768 829 - -
Sed11g1121 910 SUPERFAMILY Periplasmic binding protein-like II 449 822 - -
Sed11g1121 910 FunFam Glutamate receptor 168 326 - -
Sed11g1121 910 SUPERFAMILY Periplasmic binding protein-like I 48 466 IPR028082 -
Sed11g1121 910 FunFam Glutamate receptor 2.7 729 829 - -
Sed11g1121 910 PIRSF IGluLR_plant 12 909 IPR017103 -
Sed11g1121 910 Gene3D - 168 331 - -
Sed11g1121 910 Gene3D - 78 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1121 K05387 - - csv:101203305 1313.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1663 Sed-Chr3:10700337 Sed11g1121 Sed-Chr11:26961754 0.00E+00 dispersed
Sed06g2210 Sed-Chr6:45767673 Sed11g1121 Sed-Chr11:26961754 4.90E-220 dispersed
Sed11g0857 Sed-Chr11:20136905 Sed11g1121 Sed-Chr11:26961754 1.80E-236 dispersed
Sed11g1121 Sed-Chr11:26961754 Sed12g2237 Sed-Chr12:32792868 2.00E-144 dispersed
Sed11g1120 Sed-Chr11:26946505 Sed11g1121 Sed-Chr11:26961754 2.40E-174 tandem
Sed11g1121 Sed-Chr11:26961754 Sed11g1122 Sed-Chr11:26991672 1.70E-175 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202