Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1127 ATGGCTTCGAAGCTCTGTGACTCGTGCAAATCGGCGACCGCCACTCTCTTCTGCCGAGCCGACTCCGCCTTCCTCTGCGCAGCCTGCGACTCCAAAGTCCACGCAGCCAACAAGCTCGCGTCTCGCCACGCCCGCGTCTGGCTCTGCGAAGTCTGCGAGCAAGCCCCCGCTCACGTCACCTGCAAGGCCGACGCCGCCGCCCTCTGCCTCTCCTGCGACCACGACATACACTCCGTCAATCCCCTCGCCCGCCGCCACGACCGTGTCCCGGTCACGCCCTTCTACGACTCTAACTCCCTCGCGCTCAAGCCTTCCGCCGCTGCGATCAATTTCCTCGACGACCGTTACGACGCCGCCGAGGAGGCCGAGGCCGCTTCCTGGCTTCTCCCAAACCCTAACCCTAACCATAAGCTAATCGAAACCACTCCAGATCTGAACTCCGCTAAGTTTCAGTTTCTTCCAGAAATCGATCCTTACGATCTAGATCTGGATTACGGCTATGTAGATCCGAAACTAGAATCGCAAGATCTGAACAGTTTCGCCGCCGATGGAGTCGTTCCGGTTCAGACCGACTTCACCGCCGCCAAATCGTTGCTCTACGGTTACAATCCTCACTCAATCAGTCACAGCGTTTCGTCCTCGTCGATTGAGGTCGGAGTCGTACCGGACGGCAACGCGATGGCGGAGATTTCGAATCCGGCGACGGAATCGACGGTTGCGCCGCTGCCAATCACGGCGGCGGATCGGGAGGCGAGAGTGCTGAGGTACAGAGAGAAGAGGAAGAACAGGAAATTCGAGAAGACGATTCGATACGCATCTCGTAAAGCCTACGCCGAGACGAGACCGCGAATCAAAGGCCGGTTTGCCAAACGGACGGACATTGAACTTGGCGTGACTGGATACGGTGTCGTTCCGTCGTTTTAA 924 58.33 MASKLCDSCKSATATLFCRADSAFLCAACDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHDRVPVTPFYDSNSLALKPSAAAINFLDDRYDAAEEAEAASWLLPNPNPNHKLIETTPDLNSAKFQFLPEIDPYDLDLDYGYVDPKLESQDLNSFAADGVVPVQTDFTAAKSLLYGYNPHSISHSVSSSSIEVGVVPDGNAMAEISNPATESTVAPLPITAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELGVTGYGVVPSF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27063716 27065345 + Sed0010033.1 Sed11g1127 729773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1127 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 291 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Sed11g1127 307 CDD Bbox1_BBX-like 48 91 IPR049808 -
Sed11g1127 307 Pfam CCT motif 249 291 IPR010402 GO:0005515(InterPro)
Sed11g1127 307 CDD Bbox1_BBX-like 5 48 IPR049808 -
Sed11g1127 307 ProSiteProfiles CCT domain profile. 249 291 IPR010402 GO:0005515(InterPro)
Sed11g1127 307 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1127 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0906 Sed-Chr6:11231187 Sed11g1127 Sed-Chr11:27063716 1.80E-30 dispersed
Sed08g0523 Sed-Chr8:3448521 Sed11g1127 Sed-Chr11:27063716 2.40E-53 dispersed
Sed11g1127 Sed-Chr11:27063716 Sed12g2230 Sed-Chr12:32696280 2.60E-43 dispersed
Sed11g1127 Sed-Chr11:27063716 Sed03g1659 Sed-Chr3:10666523 1.10E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1659 . 1 331 C2C2-CO-like Transcription Factor Family AT5G24930 63.8 2.7e-76 283.5
Sed11g1127 . 1 307 C2C2-CO-like Transcription Factor Family AT5G24930 56.2 3.7e-65 246.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0600 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0598 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed04g3907 . 1 198 C2C2-CO-like Transcription Factor Family AT1G75540 56.9 4.8e-51 199.5
Sed04g1531 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 1.7e-74 277.3
Sed13g0882 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 8.2e-55 211.1
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 63.1 1.6e-53 206.8
Sed10g0979 . 1 144 C2C2-CO-like Transcription Factor Family AT2G21320 65.1 6.7e-49 191.4
Sed13g0882 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.2 2.3e-55 213.0
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.3e-53 207.2
Sed10g0979 . 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 67.8 3.4e-51 199.1
Sed04g3907 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 56.3 2.4e-52 203.4
Sed03g1716 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed03g1717 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed05g3539 . 1 177 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 2.3e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39961 PF00643 zf-B_box 8.00E-06 No_clan Sed TF