Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1127 ATGGCTTCGAAGCTCTGTGACTCGTGCAAATCGGCGACCGCCACTCTCTTCTGCCGAGCCGACTCCGCCTTCCTCTGCGCAGCCTGCGACTCCAAAGTCCACGCAGCCAACAAGCTCGCGTCTCGCCACGCCCGCGTCTGGCTCTGCGAAGTCTGCGAGCAAGCCCCCGCTCACGTCACCTGCAAGGCCGACGCCGCCGCCCTCTGCCTCTCCTGCGACCACGACATACACTCCGTCAATCCCCTCGCCCGCCGCCACGACCGTGTCCCGGTCACGCCCTTCTACGACTCTAACTCCCTCGCGCTCAAGCCTTCCGCCGCTGCGATCAATTTCCTCGACGACCGTTACGACGCCGCCGAGGAGGCCGAGGCCGCTTCCTGGCTTCTCCCAAACCCTAACCCTAACCATAAGCTAATCGAAACCACTCCAGATCTGAACTCCGCTAAGTTTCAGTTTCTTCCAGAAATCGATCCTTACGATCTAGATCTGGATTACGGCTATGTAGATCCGAAACTAGAATCGCAAGATCTGAACAGTTTCGCCGCCGATGGAGTCGTTCCGGTTCAGACCGACTTCACCGCCGCCAAATCGTTGCTCTACGGTTACAATCCTCACTCAATCAGTCACAGCGTTTCGTCCTCGTCGATTGAGGTCGGAGTCGTACCGGACGGCAACGCGATGGCGGAGATTTCGAATCCGGCGACGGAATCGACGGTTGCGCCGCTGCCAATCACGGCGGCGGATCGGGAGGCGAGAGTGCTGAGGTACAGAGAGAAGAGGAAGAACAGGAAATTCGAGAAGACGATTCGATACGCATCTCGTAAAGCCTACGCCGAGACGAGACCGCGAATCAAAGGCCGGTTTGCCAAACGGACGGACATTGAACTTGGCGTGACTGGATACGGTGTCGTTCCGTCGTTTTAA 924 58.33 MASKLCDSCKSATATLFCRADSAFLCAACDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHDRVPVTPFYDSNSLALKPSAAAINFLDDRYDAAEEAEAASWLLPNPNPNHKLIETTPDLNSAKFQFLPEIDPYDLDLDYGYVDPKLESQDLNSFAADGVVPVQTDFTAAKSLLYGYNPHSISHSVSSSSIEVGVVPDGNAMAEISNPATESTVAPLPITAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELGVTGYGVVPSF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27063716 27065345 + Sed0010033.1 Sed11g1127 729773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1127 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 291 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Sed11g1127 307 CDD Bbox1_BBX-like 48 91 IPR049808 -
Sed11g1127 307 Pfam CCT motif 249 291 IPR010402 GO:0005515(InterPro)
Sed11g1127 307 CDD Bbox1_BBX-like 5 48 IPR049808 -
Sed11g1127 307 ProSiteProfiles CCT domain profile. 249 291 IPR010402 GO:0005515(InterPro)
Sed11g1127 307 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Sed11g1127 307 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0906 Sed-Chr6:11231187 Sed11g1127 Sed-Chr11:27063716 1.80E-30 dispersed
Sed08g0523 Sed-Chr8:3448521 Sed11g1127 Sed-Chr11:27063716 2.40E-53 dispersed
Sed11g1127 Sed-Chr11:27063716 Sed12g2230 Sed-Chr12:32696280 2.60E-43 dispersed
Sed11g1127 Sed-Chr11:27063716 Sed03g1659 Sed-Chr3:10666523 1.10E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39961 PF00643 zf-B_box 8.00E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1127 - - - 0.0