Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1154 | ATGCCAAGACCACAACAAAGATATCGCGGCGTCCGACAGCGCCATTGGGGCTCTTGGGTGTCGGAAATCCGCCATCCTTTATTGAAGACTAGAATTTGGCTCGGTACTTTCGAGACTGCGGAGGATGCAGCACGGGCCTACGACGAAGCTGCGCGGCTGATGTGTGGACAGAGGGCCCGTACTAACTTCCCTTACGATGCCTCTTTGTCTCGCTCTTCGTCCTCCCGCCTTCTCTCGACTACTTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCGCTGCAGCTGACCAAGCAATCTTCGTCTCCCGTGCATTGCCCTCCAATCGACTCGATTCCAACCGACTTCGTCACGTCTCCTCGCATTTCCTCGACCGAGCCAGTAGAAGCGGAGTCGCCCAAGAAACCCAAATTGGAGACCCAGGATTGCAGGGATCAGCCGTTGATGATTGAGATATTGGATGATGATCATATCCAGCAAATGATCGAGGAGCTGCTCGATTACGACGGAATCGAGCTCCGGTGTGCCTCCGTCATGTAG | 540 | 55.0 | MPRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGQRARTNFPYDASLSRSSSSRLLSTTLTAKLHRCYMASLQLTKQSSSPVHCPPIDSIPTDFVTSPRISSTEPVEAESPKKPKLETQDCRDQPLMIEILDDDHIQQMIEELLDYDGIELRCASVM | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27466876 | 27467861 | - | Sed0007962.1 | Sed11g1154 | 729800 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1154 | 179 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1154 | 179 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1154 | 179 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 123 | IPR050913 | - | |
Sed11g1154 | 179 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1154 | 179 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1154 | 179 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1154 | 179 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1154 | 179 | MobiDBLite | consensus disorder prediction | 111 | 141 | - | - | |
Sed11g1154 | 179 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Sed11g1154 | 179 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g1154 | 179 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1411 | Sed-Chr5:27503087 | Sed11g1154 | Sed-Chr11:27466876 | 2.90E-34 | dispersed | |
Sed07g0743 | Sed-Chr7:5549713 | Sed11g1154 | Sed-Chr11:27466876 | 5.60E-41 | dispersed | |
Sed11g1154 | Sed-Chr11:27466876 | Sed13g2026 | Sed-Chr13:25166544 | 2.70E-24 | dispersed | |
Sed11g1154 | Sed-Chr11:27466876 | Sed03g1636 | Sed-Chr3:10430156 | 1.40E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39963 | PF00847 | AP2 | 9.30E-12 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1154 | - | - | - | 0.0 |