Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1154 ATGCCAAGACCACAACAAAGATATCGCGGCGTCCGACAGCGCCATTGGGGCTCTTGGGTGTCGGAAATCCGCCATCCTTTATTGAAGACTAGAATTTGGCTCGGTACTTTCGAGACTGCGGAGGATGCAGCACGGGCCTACGACGAAGCTGCGCGGCTGATGTGTGGACAGAGGGCCCGTACTAACTTCCCTTACGATGCCTCTTTGTCTCGCTCTTCGTCCTCCCGCCTTCTCTCGACTACTTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCGCTGCAGCTGACCAAGCAATCTTCGTCTCCCGTGCATTGCCCTCCAATCGACTCGATTCCAACCGACTTCGTCACGTCTCCTCGCATTTCCTCGACCGAGCCAGTAGAAGCGGAGTCGCCCAAGAAACCCAAATTGGAGACCCAGGATTGCAGGGATCAGCCGTTGATGATTGAGATATTGGATGATGATCATATCCAGCAAATGATCGAGGAGCTGCTCGATTACGACGGAATCGAGCTCCGGTGTGCCTCCGTCATGTAG 540 55.0 MPRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGQRARTNFPYDASLSRSSSSRLLSTTLTAKLHRCYMASLQLTKQSSSPVHCPPIDSIPTDFVTSPRISSTEPVEAESPKKPKLETQDCRDQPLMIEILDDDHIQQMIEELLDYDGIELRCASVM 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27466876 27467861 - Sed0007962.1 Sed11g1154 729800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1154 179 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1154 179 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1154 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 123 IPR050913 -
Sed11g1154 179 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1154 179 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1154 179 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1154 179 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1154 179 MobiDBLite consensus disorder prediction 111 141 - -
Sed11g1154 179 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Sed11g1154 179 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1154 179 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1411 Sed-Chr5:27503087 Sed11g1154 Sed-Chr11:27466876 2.90E-34 dispersed
Sed07g0743 Sed-Chr7:5549713 Sed11g1154 Sed-Chr11:27466876 5.60E-41 dispersed
Sed11g1154 Sed-Chr11:27466876 Sed13g2026 Sed-Chr13:25166544 2.70E-24 dispersed
Sed11g1154 Sed-Chr11:27466876 Sed03g1636 Sed-Chr3:10430156 1.40E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39963 PF00847 AP2 9.30E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1154 - - - 0.0