Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1156 ATGGCGTCCTCTATTCTCCCTCTCGCTTCCGCCTCCCCTTCAGCTTCACTTTCTTCGCCTGGAAACAATAAGCAGGGGAAGTTGAACCTTGGATCTAACTGTCTGAGTTTTGATCGAGAGAAGAATCATCCATTTGCGAAGACGAAGGATATCTGTGCAACCGCTATCATGATTCATGGCCATATAATGAGGATTTCGATGGTTGCTTCAGTTAATGTCTCTCGGTTTGAGGGGATAACAATGGCCCCTCCTGATCCAATTCTTGGAGTTTCTGAGGCTTTCAAAGCTGATACGCATGGAAACAAACTCAACTTGGGAGTTGGTGCATACCGCACCGAAGAGCTTCAACCTTATGTGCTTGATGTTGTGAAGAAGGTTGAGAAACTCATGCTAGAGAGGGGAGATAACAAAGAGTATCTCCCCATTGAAGGTCTAGCAGCATTCAATAAGGCCACTGCAGAGTTATTATTTGGTGCTGATAATGAAGTTATCAAGCAGCAACGTGTTGCGACTATTCAAGGTCTGTCAGGGACTGGTTCTCTTAGAATAGCTGCAGCTTTTATTGAACGATACTTTGCTGGTGCAAAAGTCATTATATCTTCTCCAACTTGGGGTAATCATAAAAATATTTTCAATGATGCAAGAGTTCCATGGTCTGAGTATCGATATTACGATCCTAAAACAGTTGGTTTGGATTTTGATGGGATGATATCTGATATTAAGGCAGCACCTGAAGGGTCTTTTGTGTTGCTTCACGGTTGTGCCCACAACCCAACTGGAATTGATCCAACACCTGAACAGTGGGAAAAAATTGCTGATGTCATTCAGGAAAAGAACCATATTCCATTTTTCGATGTTGCATATCAGGGATTTGCTAGTGGAAGCCTTGATGCAGACGCATCATCTGTTAGGCTGTTTGCTGCTCGTGGTTTGGAGCTTCTGGTTGCTCAATCATATAGTAAAAATCTTGGTCTTTATGCTGAAAGGATTGGGGCTATCAACGTCGTCTGCTCATCAGCAGATGCAGCAACAAGAGTAAAGAGCCAGCTAAAGAGGCTTGCTCGACCAATGTACTCAAATCCTCCAGTTCACGGGGCTAAAATTGTTGCAAATATTGTTGGAGATCCAACACTATTTAACGAGTGGAAAGCAGAAATGGAAATGATGGCTGGAAGGATAAAGAATGTTAGACAGAAGCTCTACGATAGTCTCTGTGCAAAAGATAAAAGTGGGAAAGATTGGTCGTTTATACTCAAGCAGATTGGCATGTTTTCATTCACAGGCTTAAGCAAAGTCCAGAGTGATAATATGACGGACAAGTGGCATGTATACATGACGAAGGACGGACGGATATCCTTGGCGGGACTATCGTTAGCTAAATGTGAATATCTCGCAGACGCCATCATCGATTCATTCCACAATGTACGGTAA 1431 42.98 MASSILPLASASPSASLSSPGNNKQGKLNLGSNCLSFDREKNHPFAKTKDICATAIMIHGHIMRISMVASVNVSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVEKLMLERGDNKEYLPIEGLAAFNKATAELLFGADNEVIKQQRVATIQGLSGTGSLRIAAAFIERYFAGAKVIISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARGLELLVAQSYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRLARPMYSNPPVHGAKIVANIVGDPTLFNEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMFSFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27493191 27497894 + Sed0007080.2 Sed11g1156 729802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1156 476 PRINTS Aspartate aminotransferase signature 249 268 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Sed11g1156 476 PRINTS Aspartate aminotransferase signature 417 435 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Sed11g1156 476 PRINTS Aspartate aminotransferase signature 280 292 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Sed11g1156 476 PRINTS Aspartate aminotransferase signature 348 373 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Sed11g1156 476 FunFam Aspartate aminotransferase 360 468 - -
Sed11g1156 476 Gene3D - 134 375 IPR015421 -
Sed11g1156 476 FunFam Aspartate aminotransferase 134 375 - -
Sed11g1156 476 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 318 331 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Sed11g1156 476 SUPERFAMILY PLP-dependent transferases 74 470 IPR015424 -
Sed11g1156 476 CDD AAT_like 103 468 - -
Sed11g1156 476 Gene3D Aspartate Aminotransferase, domain 1 79 468 IPR015422 -
Sed11g1156 476 PANTHER ASPARTATE AMINOTRANSFERASE 63 475 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Sed11g1156 476 Pfam Aminotransferase class I and II 101 468 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Sed11g1156 476 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1156 K00811 - - csv:101213342 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1156 Sed-Chr11:27493191 Sed13g2126 Sed-Chr13:25919250 1.10E-125 dispersed
Sed11g1155 Sed-Chr11:27493191 Sed11g1156 Sed-Chr11:27493191 3.40E-265 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g534 . . . Bda03g00085 . . . . . . . . . . Sed11g1156 . . Bhi04g00034 Tan02g2749 Cmetu03g1805 . . . Lcy13g1814 . . . . . . . . Cone7ag1676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006495 1 2 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 2 1 37