Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1159 ATGGCTTTCCGGAACCACCTCTCTCGGGACCTTCCTCTTCATTACGCGAACCAGCCCGAACGGCCGCTTGATAACACTCTGCGCTCTATTTTATCCGATCAGGTTACCGATCGTTCTTCCTCCGGCGATGGTTCTAAGTCTGAGAATCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAGCTCCGAATTCTCAGTACTCCGGTGAAACCACGGCGGCCGGTGCGGATAACGTTAATACCGACTTCCTTAATCTTCACCCGTCCGGTCAGTGGCTCTCCCGCCCGATCCTCCATCGGAATCACAGCGATGTTGGCGATGAAGTCGCCGATGCTATGATTGGCGCCACCGACGCCTTGTCGCGCGAATCGGATGATTTGAAGAACAGCAGCGGCGGCGGAGGGGAGGGGCTGAACAACAGCGATGATGTGGCGGTGGAGAGCGATGGTAATGAAGGTGGTAATCATGGTGGAGATGCGGCGGCGGTGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTGTCCACTCACGTCGCCTGTCTCCGGATCGCGACGCCGGTGGATCAGTTGCCGAAGATTGATTCTCAGCTTTCTCAGTCGCAGAATGTGGCGGCGAAATACTCGTCGCTGGGGCACGGTTCTCAACCAGCAGTCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTTCAGCAACATGTCCGCGTTCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGATGAAGACCAGATAGATAGTGATGCTAATTTGTTTGATGGAAGTTTGGACGGTCATGATGTTATGGGATTTGGCCCCCTTATCCCAACAGAGAGCGAGAGATCCTTGATAGAGAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGTTACAAAGAGAAAATTGTAGACATAAGGGAGGAAATATTACGCAAAAGGAGAGCAGGGAAACTGCCTGGAGACACTACCTCCGTCTTAAAAGCTTGGTGGCAATCTCATTCAAAATGGCCATATCCTACTGAGGACGACAAAGCGAAGTTGGTTCAGGAAACTGGTCTGCAACTGAAGCAAATCAATAACTGGTTTATAAACCAAAGGAAAAGGAATTGGCACACAAACCCTTCAACCTCAACAACCTTGAAGGCAAAACGCAAGAGTAATGCAGGTGATGCGACCGGCGACGACCATCCATAG 1350 49.78 MAFRNHLSRDLPLHYANQPERPLDNTLRSILSDQVTDRSSSGDGSKSENPLQSTPNWLNSALLRNQAPNSQYSGETTAAGADNVNTDFLNLHPSGQWLSRPILHRNHSDVGDEVADAMIGATDALSRESDDLKNSSGGGGEGLNNSDDVAVESDGNEGGNHGGDAAAVNWQNARFKAEILAHPLYEQLLSTHVACLRIATPVDQLPKIDSQLSQSQNVAAKYSSLGHGSQPAVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLDGHDVMGFGPLIPTESERSLIERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEDDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKAKRKSNAGDATGDDHP 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27543477 27549208 + Sed0025103.1 Sed11g1159 729805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1159 449 SUPERFAMILY Homeodomain-like 363 427 IPR009057 -
Sed11g1159 449 Pfam KNOX2 domain 233 283 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1159 449 Pfam Homeobox KN domain 381 420 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed11g1159 449 SMART KNOX2_2 229 284 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1159 449 MobiDBLite consensus disorder prediction 22 55 - -
Sed11g1159 449 CDD homeodomain 364 425 IPR001356 GO:0003677(InterPro)
Sed11g1159 449 SMART ELK_2 341 362 IPR005539 GO:0003677(InterPro)
Sed11g1159 449 ProSiteProfiles ELK domain profile. 341 361 IPR005539 GO:0003677(InterPro)
Sed11g1159 449 ProSiteProfiles 'Homeobox' domain profile. 361 424 IPR001356 GO:0003677(InterPro)
Sed11g1159 449 MobiDBLite consensus disorder prediction 126 165 - -
Sed11g1159 449 Pfam ELK domain 341 362 IPR005539 GO:0003677(InterPro)
Sed11g1159 449 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 166 423 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed11g1159 449 Pfam KNOX1 domain 175 216 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1159 449 SMART KNOX1_2 173 217 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1159 449 MobiDBLite consensus disorder prediction 418 449 - -
Sed11g1159 449 MobiDBLite consensus disorder prediction 1 55 - -
Sed11g1159 449 FunFam homeobox protein knotted-1-like 3 isoform X1 362 423 - -
Sed11g1159 449 Gene3D - 362 423 - -
Sed11g1159 449 MobiDBLite consensus disorder prediction 418 437 - -
Sed11g1159 449 SMART HOX_1 363 428 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1631 Sed-Chr3:10375588 Sed11g1159 Sed-Chr11:27543477 3.80E-177 dispersed
Sed03g1632 Sed-Chr3:10375588 Sed11g1159 Sed-Chr11:27543477 3.80E-177 dispersed
Sed11g1159 Sed-Chr11:27543477 Sed11g1161 Sed-Chr11:27543477 1.70E-253 dispersed
Sed11g1159 Sed-Chr11:27543477 Sed11g1160 Sed-Chr11:27543477 3.50E-259 tandem
Sed11g1159 Sed-Chr11:27543477 Sed13g1994 Sed-Chr13:24792996 3.30E-172 wgd
Sed11g1159 Sed-Chr11:27543477 Sed03g1630 Sed-Chr3:10375075 2.40E-199 wgd
Sed11g1159 Sed-Chr11:27543477 Sed05g1718 Sed-Chr5:30987398 2.70E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39964 PF03791 KNOX2 1.70E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1159 - - - 0.0