Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1160 ATGGCTTTCCGGAACCACCTCTCTCGGGACCTTCCTCTTCATTACGCGAACCAGCCCGAACGGCCGCTTGATAACACTCTGCGCTCTATTTTATCCGATCAGGTTACCGATCGTTCTTCCTCCGGCGATGGTTCTAAGTCTGAGAATCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAGCTCCGAATTCTCAGTACTCCGGTGAAACCACGGCGGCCGGTGCGGATAACGTTAATACCGACTTCCTTAATCTTCACCCGTCCGGTCAGTGGCTCTCCCGCCCGATCCTCCATCGGAATCACAGCGATGTTGGCGATGAAGTCGCCGATGCTATGATTGGCGCCACCGACGCCTTGTCGCGCGAATCGGATGATTTGAAGAACAGCAGCGGCGGCGGAGGGGAGGGGCTGAACAACAGCGATGATGTGGCGGTGGAGAGCGATGGTAATGAAGGTGGTAATCATGGTGGAGATGCGGCGGCGGTGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTGTCCACTCACGTCGCCTGTCTCCGGATCGCGACGCCGGTGGATCAGTTGCCGAAGATTGATTCTCAGCTTTCTCAGTCGCAGAATGTGGCGGCGAAATACTCGTCGCTGGGGCACGGTTCTCAACCAGCAGTCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTTCAGCAACATGTCCGCGTTCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGATGAAGACCAGATAGATAGTGATGCTAATTTGTTTGATGGAAGTTTGGACGGTCATGATGTTATGGGATTTGGCCCCCTTATCCCAACAGAGAGCGAGAGATCCTTGATAGAGAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGTTACAAAGAGAAAATTGTAGACATAAGGGAGGAAATATTACGCAAAAGGAGAGCAGGGAAACTGCCTGGAGACACTACCTCCGTCTTAAAAGCTTGGTGGCAATCTCATTCAAAATGGCCATATCCTACTGAGGACGACAAAGCGAAGTTGGTTCAGGAAACTGGTCTGCAACTGAAGCAAATCAATAACTGGTTTATAAACCAAAGGAAAAGGAATTGGCACACAAACCCTTCAACCTCAACAACCTTGAAGGCAAAACGCAAGAGAAGTAATGCAGGTGATGCGACCGGCGACGACCATCCATAG 1353 49.74 MAFRNHLSRDLPLHYANQPERPLDNTLRSILSDQVTDRSSSGDGSKSENPLQSTPNWLNSALLRNQAPNSQYSGETTAAGADNVNTDFLNLHPSGQWLSRPILHRNHSDVGDEVADAMIGATDALSRESDDLKNSSGGGGEGLNNSDDVAVESDGNEGGNHGGDAAAVNWQNARFKAEILAHPLYEQLLSTHVACLRIATPVDQLPKIDSQLSQSQNVAAKYSSLGHGSQPAVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLDGHDVMGFGPLIPTESERSLIERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEDDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKAKRKRSNAGDATGDDHP 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27543477 27549208 + Sed0025103.2 Sed11g1160 729806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1160 450 SUPERFAMILY Homeodomain-like 363 427 IPR009057 -
Sed11g1160 450 Pfam KNOX2 domain 233 283 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1160 450 Pfam Homeobox KN domain 381 420 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed11g1160 450 SMART KNOX2_2 229 284 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1160 450 MobiDBLite consensus disorder prediction 22 55 - -
Sed11g1160 450 MobiDBLite consensus disorder prediction 418 435 - -
Sed11g1160 450 CDD homeodomain 364 425 IPR001356 GO:0003677(InterPro)
Sed11g1160 450 SMART ELK_2 341 362 IPR005539 GO:0003677(InterPro)
Sed11g1160 450 ProSiteProfiles ELK domain profile. 341 361 IPR005539 GO:0003677(InterPro)
Sed11g1160 450 Pfam ELK domain 341 362 IPR005539 GO:0003677(InterPro)
Sed11g1160 450 ProSiteProfiles 'Homeobox' domain profile. 361 424 IPR001356 GO:0003677(InterPro)
Sed11g1160 450 MobiDBLite consensus disorder prediction 418 450 - -
Sed11g1160 450 MobiDBLite consensus disorder prediction 126 165 - -
Sed11g1160 450 MobiDBLite consensus disorder prediction 436 450 - -
Sed11g1160 450 Pfam KNOX1 domain 175 216 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1160 450 SMART KNOX1_2 173 217 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1160 450 MobiDBLite consensus disorder prediction 1 55 - -
Sed11g1160 450 FunFam homeobox protein knotted-1-like 3 isoform X1 362 423 - -
Sed11g1160 450 Gene3D - 362 423 - -
Sed11g1160 450 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 166 423 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed11g1160 450 SMART HOX_1 363 428 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1160 Sed-Chr11:27543477 Sed11g1162 Sed-Chr11:27543477 5.90E-254 dispersed
Sed11g1159 Sed-Chr11:27543477 Sed11g1160 Sed-Chr11:27543477 3.50E-259 tandem
Sed11g1160 Sed-Chr11:27543477 Sed11g1161 Sed-Chr11:27543477 5.90E-254 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39965 PF03791 KNOX2 1.70E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1160 - - - 0.0