Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1162 ATGGCTTTCCGGAACCACCTCTCTCGGGACCTTCCTCTTCATTACGCGAACCAGCCCGAACGGCCGCTTGATAACACTCTGCGCTCTATTTTATCCGATCAGGTTACCGATCGTTCTTCCTCCGGCGATGGTTCTAAGTCTGAGAATCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAGCTCCGAATTCTCAGTACTCCGGTGAAACCACGGCGGCCGGTGCGGATAACGTTAATACCGACTTCCTTAATCTTCACCCGTCCGGTCAGTGGCTCTCCCGCCCGATCCTCCATCGGAATCACAGCGATGTTGGCGATGAAGTCGCCGATGCTATGATTGGCGCCACCGACGCCTTGTCGCGCGAATCGGATGATTTGAAGAACAGCAGCGGCGGCGGAGGGGAGGGGCTGAACAACAGCGATGATGTGGCGGTGGAGAGCGATGGTAATGAAGGTGGTAATCATGGTGGAGATGCGGCGGCGGTGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTGTCCACTCACGTCGCCTGTCTCCGGATCGCGACGCCGGTGGATCAGTTGCCGAAGATTGATTCTCAGCTTTCTCAGTCGCAGAATGTGGCGGCGAAATACTCGTCGCTGGGGCACGGTTCTCAACCAGCAGTCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTTCAGCAACATGTCCGCGTTCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGATGAAGACCAGATAGATAGTGATGCTAATTTGTTTGATGGAAGTTTGGACGGTCATGATGTTATGGGATTTGGCCCCCTTATCCCAACAGAGAGCGAGAGATCCTTGATAGAGAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGTTACAAAGAGAAAATTGTAGACATAAGGGAGGAAATATTACGCAAAAGGAGAGCAGGGAAACTGCCTGGAGACACTACCTCCGTCTTAAAAGCTTGGTGGCAATCTCATTCAAAATGGCCATATCCTACTGAGGACGACAAAGCGAAGTTGGTTCAGGAAACTGGTCTGCAACTGAAGCAAATCAATAACTGGTTTATAAACCAAAGGAAAAGGAATTGGCACACAAACCCTTCAACCTCAACAACCTTGAAGGCAAAACGCAAGAGGTGTAGCTACTAA 1326 49.47 MAFRNHLSRDLPLHYANQPERPLDNTLRSILSDQVTDRSSSGDGSKSENPLQSTPNWLNSALLRNQAPNSQYSGETTAAGADNVNTDFLNLHPSGQWLSRPILHRNHSDVGDEVADAMIGATDALSRESDDLKNSSGGGGEGLNNSDDVAVESDGNEGGNHGGDAAAVNWQNARFKAEILAHPLYEQLLSTHVACLRIATPVDQLPKIDSQLSQSQNVAAKYSSLGHGSQPAVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLDGHDVMGFGPLIPTESERSLIERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEDDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKAKRKRCSY 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27543477 27549208 + Sed0025103.4 Sed11g1162 729808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1162 441 FunFam homeobox protein knotted-1-like 3 isoform X1 362 423 - -
Sed11g1162 441 SUPERFAMILY Homeodomain-like 363 427 IPR009057 -
Sed11g1162 441 Pfam KNOX2 domain 233 283 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1162 441 SMART KNOX2_2 229 284 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1162 441 MobiDBLite consensus disorder prediction 22 55 - -
Sed11g1162 441 CDD homeodomain 364 425 IPR001356 GO:0003677(InterPro)
Sed11g1162 441 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 165 423 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed11g1162 441 SMART ELK_2 341 362 IPR005539 GO:0003677(InterPro)
Sed11g1162 441 ProSiteProfiles ELK domain profile. 341 361 IPR005539 GO:0003677(InterPro)
Sed11g1162 441 ProSiteProfiles 'Homeobox' domain profile. 361 424 IPR001356 GO:0003677(InterPro)
Sed11g1162 441 MobiDBLite consensus disorder prediction 126 165 - -
Sed11g1162 441 Gene3D - 360 434 - -
Sed11g1162 441 SMART KNOX1_2 173 217 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1162 441 Pfam Homeobox KN domain 381 420 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed11g1162 441 MobiDBLite consensus disorder prediction 1 55 - -
Sed11g1162 441 Pfam KNOX1 domain 175 216 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed11g1162 441 Pfam ELK domain 341 362 IPR005539 GO:0003677(InterPro)
Sed11g1162 441 SMART HOX_1 363 428 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1160 Sed-Chr11:27543477 Sed11g1162 Sed-Chr11:27543477 5.90E-254 dispersed
Sed11g1162 Sed-Chr11:27543477 Sed13g1994 Sed-Chr13:24792996 1.20E-169 dispersed
Sed11g1161 Sed-Chr11:27543477 Sed11g1162 Sed-Chr11:27543477 5.70E-254 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39967 PF03791 KNOX2 1.60E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1162 - - - 0.0