Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1162 | ATGGCTTTCCGGAACCACCTCTCTCGGGACCTTCCTCTTCATTACGCGAACCAGCCCGAACGGCCGCTTGATAACACTCTGCGCTCTATTTTATCCGATCAGGTTACCGATCGTTCTTCCTCCGGCGATGGTTCTAAGTCTGAGAATCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAGCTCCGAATTCTCAGTACTCCGGTGAAACCACGGCGGCCGGTGCGGATAACGTTAATACCGACTTCCTTAATCTTCACCCGTCCGGTCAGTGGCTCTCCCGCCCGATCCTCCATCGGAATCACAGCGATGTTGGCGATGAAGTCGCCGATGCTATGATTGGCGCCACCGACGCCTTGTCGCGCGAATCGGATGATTTGAAGAACAGCAGCGGCGGCGGAGGGGAGGGGCTGAACAACAGCGATGATGTGGCGGTGGAGAGCGATGGTAATGAAGGTGGTAATCATGGTGGAGATGCGGCGGCGGTGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTGTCCACTCACGTCGCCTGTCTCCGGATCGCGACGCCGGTGGATCAGTTGCCGAAGATTGATTCTCAGCTTTCTCAGTCGCAGAATGTGGCGGCGAAATACTCGTCGCTGGGGCACGGTTCTCAACCAGCAGTCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTTCAGCAACATGTCCGCGTTCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGATGAAGACCAGATAGATAGTGATGCTAATTTGTTTGATGGAAGTTTGGACGGTCATGATGTTATGGGATTTGGCCCCCTTATCCCAACAGAGAGCGAGAGATCCTTGATAGAGAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAATGGTTACAAAGAGAAAATTGTAGACATAAGGGAGGAAATATTACGCAAAAGGAGAGCAGGGAAACTGCCTGGAGACACTACCTCCGTCTTAAAAGCTTGGTGGCAATCTCATTCAAAATGGCCATATCCTACTGAGGACGACAAAGCGAAGTTGGTTCAGGAAACTGGTCTGCAACTGAAGCAAATCAATAACTGGTTTATAAACCAAAGGAAAAGGAATTGGCACACAAACCCTTCAACCTCAACAACCTTGAAGGCAAAACGCAAGAGGTGTAGCTACTAA | 1326 | 49.47 | MAFRNHLSRDLPLHYANQPERPLDNTLRSILSDQVTDRSSSGDGSKSENPLQSTPNWLNSALLRNQAPNSQYSGETTAAGADNVNTDFLNLHPSGQWLSRPILHRNHSDVGDEVADAMIGATDALSRESDDLKNSSGGGGEGLNNSDDVAVESDGNEGGNHGGDAAAVNWQNARFKAEILAHPLYEQLLSTHVACLRIATPVDQLPKIDSQLSQSQNVAAKYSSLGHGSQPAVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLDGHDVMGFGPLIPTESERSLIERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEDDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKAKRKRCSY | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27543477 | 27549208 | + | Sed0025103.4 | Sed11g1162 | 729808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1162 | 441 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 362 | 423 | - | - | |
Sed11g1162 | 441 | SUPERFAMILY | Homeodomain-like | 363 | 427 | IPR009057 | - | |
Sed11g1162 | 441 | Pfam | KNOX2 domain | 233 | 283 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g1162 | 441 | SMART | KNOX2_2 | 229 | 284 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g1162 | 441 | MobiDBLite | consensus disorder prediction | 22 | 55 | - | - | |
Sed11g1162 | 441 | CDD | homeodomain | 364 | 425 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1162 | 441 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 165 | 423 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed11g1162 | 441 | SMART | ELK_2 | 341 | 362 | IPR005539 | GO:0003677(InterPro) | |
Sed11g1162 | 441 | ProSiteProfiles | ELK domain profile. | 341 | 361 | IPR005539 | GO:0003677(InterPro) | |
Sed11g1162 | 441 | ProSiteProfiles | 'Homeobox' domain profile. | 361 | 424 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1162 | 441 | MobiDBLite | consensus disorder prediction | 126 | 165 | - | - | |
Sed11g1162 | 441 | Gene3D | - | 360 | 434 | - | - | |
Sed11g1162 | 441 | SMART | KNOX1_2 | 173 | 217 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g1162 | 441 | Pfam | Homeobox KN domain | 381 | 420 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed11g1162 | 441 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Sed11g1162 | 441 | Pfam | KNOX1 domain | 175 | 216 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed11g1162 | 441 | Pfam | ELK domain | 341 | 362 | IPR005539 | GO:0003677(InterPro) | |
Sed11g1162 | 441 | SMART | HOX_1 | 363 | 428 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g1160 | Sed-Chr11:27543477 | Sed11g1162 | Sed-Chr11:27543477 | 5.90E-254 | dispersed | |
Sed11g1162 | Sed-Chr11:27543477 | Sed13g1994 | Sed-Chr13:24792996 | 1.20E-169 | dispersed | |
Sed11g1161 | Sed-Chr11:27543477 | Sed11g1162 | Sed-Chr11:27543477 | 5.70E-254 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39967 | PF03791 | KNOX2 | 1.60E-19 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1162 | - | - | - | 0.0 |