Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1164 ATGGCCTCGAAGACCAGTTCGAAACCTTCTGCAAAGCAAACTAAAGGGATAACCGGCGTTACAGCAACTGATGCTAGCGATCTAAAGTCCTTACCTTCACAGACTTCTTCGGGGGGAAAAATTGGTTCATTTATCTATGGAGATGTATCAAACTCCTCACAGAGATCCTTGAATCAATCTTCTTTGATTGATTCATCAAATACCAAATCCTCAAGTTTGATTCCCAAAGAGTCTACTGAGTCTTGTAATCAAAAGGTCAAAGAAAATTCCTTGAAACCTGGCTCTAAGTTATTGACAGAAGGAGATCCTGCTCTTAGCGGGACTCGGGGCTTAGCAGAGGGCACTATAGATCAAGAGAAGAAAGCATTGGAATGGGAAAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAGCAAACGGTCTTGGCAAAACCAGCGGAAGTGCTAAAATTAGTGACCGTATCGAGATGGTCGAGAGTGGCAAGAGCAGTATGTGTCGAGGAAGCACAAGCAGCGACATCAGTGATGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGCAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCAATCCAAGCTGTACGTATAAGGGATGGGAGTTTGGGATTAGGCCATTTTAGACTATTGAAGAGACTGGGTTGTGGCGATATCGGCAGCGTCTACCTGTCGGAGTTGAGTGGCACTAAATGTTATTTTGCAATGAAGGTCATGGACAAAGGATCTCTAGCCAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACACTATATACCCATTTCGAGACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGACAGCCAGGGAAGCATTTTCCCGAACAGGCAGTGAAATTTTATGTAGCAGAGGTCCTCCTATCACTGGAGTATCTTCACATGCTTGGCATTGTGTACCGGGACCTTAAGCCTGAGAATGTTCTCGTGAGGGAAGATGGACACATCATGCTTTCGGACTTCGATCTTTCCCTACGATGTGCTGTTAGTCCAACATTAGTGAGGGGCTCAAGTTCCGAGTCTGAACCCTTAAGAAAGAGTTCAGGTTACTGTGCCCAGCCAGCTTGTATTGAACCTCCTTCCTGCATCCAGCCATCCTGTGTAGTCCCCACGTCGTGCTTCACTCCTCGATTTTTCTCTAGCAAATCAAAGAAGGACAGAAAACCCAAGACTGAAATAGGTAACCAGGTAACACCATTGCCAGAGCTCATGGCAGAGCCTACGGAAGCAAGGTCAATGTCGTTCGTTGGTACACATGAGTACTTGGCTCCGGAGATCATTAAAGGCGAAGGCCACGGAAGTGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATACGAACTGTTGTTTGGTAAAACACCTTTTAAGGGATCTGGGAACCGAGCCACGCTGTTCAACGTTGTTGGTCAGCCTTTGCGCTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCTAAGGATCTCATCAGAGGATTGCTTGTCAAGGAACCGCAGCACAGATTAGCTTATAAAAGAGGAGCAACTGAGATCAAACAACATCCATTCTTTGAAGGTGTTAACTGGGCACTGATACGATGCGCTTCGCCACCAGAAGTACCGAAGCCTGTCGAGATGGAGAGGATACCATCACCAGCACCTCCAAACAGTGGAAAAGCTGTAATGGCTAGACCGCCTGGTCCCGATTCCAAATCGTCCGATAATTATCTTGAATTTGATTTCTTTTAG 1845 46.18 MASKTSSKPSAKQTKGITGVTATDASDLKSLPSQTSSGGKIGSFIYGDVSNSSQRSLNQSSLIDSSNTKSSSLIPKESTESCNQKVKENSLKPGSKLLTEGDPALSGTRGLAEGTIDQEKKALEWESGKDSSVSAKVSDGANGLGKTSGSAKISDRIEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRIRDGSLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLSLEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVRGSSSESEPLRKSSGYCAQPACIEPPSCIQPSCVVPTSCFTPRFFSSKSKKDRKPKTEIGNQVTPLPELMAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAAKDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEMERIPSPAPPNSGKAVMARPPGPDSKSSDNYLEFDFF 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27556452 27558736 - Sed0026971.1 Sed11g1164 729810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1164 614 CDD STKc_phototropin_like 217 575 - -
Sed11g1164 614 FunFam Serine/threonine-protein kinase AGC1-7 449 574 - -
Sed11g1164 614 MobiDBLite consensus disorder prediction 577 606 - -
Sed11g1164 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1164 614 MobiDBLite consensus disorder prediction 1 151 - -
Sed11g1164 614 Gene3D Transferase(Phosphotransferase) domain 1 302 370 - -
Sed11g1164 614 MobiDBLite consensus disorder prediction 131 149 - -
Sed11g1164 614 FunFam serine/threonine-protein kinase D6PK-like 302 369 - -
Sed11g1164 614 PANTHER FLIPPASE KINASE 1-RELATED 85 578 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed11g1164 614 Pfam Protein kinase domain 453 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1164 614 Pfam Protein kinase domain 219 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1164 614 Gene3D Transferase(Phosphotransferase) domain 1 450 574 - -
Sed11g1164 614 MobiDBLite consensus disorder prediction 1 90 - -
Sed11g1164 614 ProSiteProfiles Protein kinase domain profile. 218 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1164 614 SUPERFAMILY Protein kinase-like (PK-like) 193 584 IPR011009 -
Sed11g1164 614 SMART serkin_6 218 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1164 614 Gene3D Phosphorylase Kinase; domain 1 216 301 - -
Sed11g1164 614 FunFam Serine/threonine-protein kinase D6PK-like 216 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0513 Sed-Chr6:4427113 Sed11g1164 Sed-Chr11:27556452 5.10E-193 dispersed
Sed08g1411 Sed-Chr8:28759496 Sed11g1164 Sed-Chr11:27556452 7.80E-194 dispersed
Sed08g1891 Sed-Chr8:33424281 Sed11g1164 Sed-Chr11:27556452 1.80E-285 dispersed
Sed08g1892 Sed-Chr8:33424281 Sed11g1164 Sed-Chr11:27556452 1.80E-285 dispersed
Sed11g0101 Sed-Chr11:933784 Sed11g1164 Sed-Chr11:27556452 3.80E-108 dispersed
Sed11g1164 Sed-Chr11:27556452 Sed14g1271 Sed-Chr14:21747693 2.10E-230 dispersed
Sed11g1164 Sed-Chr11:27556452 Sed14g1270 Sed-Chr14:21747693 2.10E-230 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79905 PF00069 Pkinase 3.30E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1164 K08286 - csv:101213662 1040.41