Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1173 ATGAAGATCTCTAATTCCTCTATTTTCTTCTCATTCCTTTTCTTTACTTTGCTCATATCACCTGCCATTGCTGCCAAAAAGTCATATGTGGTGTTACTGGGATCACATTCACATGGATTAGAAGTTTCAGAAGTAGATCTTCAAAAAGTGGTTGATTCCCATCACAAATTACTTGGACCCTTCTTGGCCAGTGCTAAGGAGGTCAAAGATGCCATATTTTACTCCTACAAGAAGCACATAAACGGCTTTGCCGCAATTCTGGACGAGGAAGTAGCAGCCGAGCTCGCAAAGCATCCAGAAGTAGCAGCAGTGTTGCCAAACGGAAGAAAAGAATTACACACAACACATTCATGGGAGTTTATGAAGCTGGAGAAGAATGGTGTAATTCCTGCTAATTCTCCATGGTGGAAGGCTAAATTTGGAAAAGATGTCATTATCGCCAATCTCGACACGGGTGTATGGCCTGAGTCCCAGAGTTTTGGAGAACAAGGCATTGTTGGTCCTGTCCCAAAAAGGTGGAAAGGAGGTTGCACTGATAAAACGCCGGATCGAGTGCCTTGCAACAGGAAACTCATCGGAGCAAAATACTTCAACGAGGGGTACACAGCTTATTTGAAATCCAAAAACTCCACAGCCGCCCTCGTGGCCGTAATCAACTCCACTCGTGACTACGAAGGCCATGGCTCCCACACCCTGTCGACTGCAGGCGGGAGCTATGTGCACGGCGCCAACGTGTTCGGTATGGGTCAGGGAACTGCCAAGGGCGGGTCTCCAAAGGCCCGAGTTGCTGCATACAAGGTGTGCTGGCCGCTGGACAAGGGAGGGTGCTTCGATGCCGACATCACGGAGGCATTCGACCATGCCCTCCACGACGGTGTCGACGTGATTTCCCTCTCCCTTGGCGGCACTGCATCCGACTACTCTGAAGATCTCATCGCCATCTCTGCCTTCCATGCCGTGAAGAAGGGAATCCCCGTCGTGTGCTCCGGTGGTAACTCCGGCCCCGGTGCGGAGACAGTTTCGAATGTTGCTCCTTGGATCTTGACCGTTGCTGCCAGTACTTTGGACCGTGAATTTCAGGCTACTGTTCAGATTGGTAATGGCCGCCGTTTCCAGGGTTCCAGTCTCTCAAAAGCACTATCACAAAAGAAGCAATACCATTTGATAACCGGAGCTCAAGCGAAAGCGAAAAACGCAACCACGGACGATATCTTGGTTTGCATGAGAGGGGAGACAGCAAGAATGGACAAAGGAGAACGAGCGTCCCTCGCGGGCGCCGCCGGAATGATTCTATGCAACGACGAAGTCAGTGGGTTCGAACTCATCGCCGATCTCCACGTCCTCCCGGCTTCACACATCAATTACAACGACGGCCAAGCTCTTCTTTCCTACATCAATTCCACCAAGAATCCGATGGGGTATTTGATCCCGCCGTCGGCGAAGCTTCACACCAAACCTGCTCCGACTATGGCCGCATTCTCGTCCCGTGGACCCAATGTTATTACTCCTGAGATTATCAAGCCGGACGTGACGGCACCAGGCGTGAACATAATAGCCGCCTTCACAGAAGGAGCAAGCCCATCAGGCGAGCCGTACGACAACCGAACGGTCCCCTTCATAACAATGTCGGGCACCTCCATGTCCTGCCCGCACGTCGCCGGCCTCGTCGGCCTCCTCCGCTCCATCTACCCGCACTGGTCCCCCGCCGCCCTCAAGTCCGCCATCATGACCTCCGCCAGAGTCCGCGACGACGCCAACCGCCCCATGCGCGACGGCGGCTCCCCCTCCCTCGCCGACGCCACCCCCTTCGCCTTCGGCTCCGGCCACATCCGCCCCCTCGCCGCCGCCGACCCCGGCCTCGTCTACGACCTCGCCCCCACCGACTACCTCCACTTCCTCTGCGCCGCCGGTTACGACAACAAATCCATCTCGGTGTTCTCCGATGCGGGCTTCAAGTGCCCCGATTCCGCGAGTTTGCTGGATTTCAACTACCCGAACATCGCGGTTCGGGGTTTGAATGGGAGCGTCACGGTGAGCCGGAGATTGAAGAACGTTGGATCTCCGGGGACGTACAGAGCCTATGTGCGGCGGCCGGCGGGGATTAGGGTTTCGGTGAGACCTAGGGTTTTGAAGTTTGAGAATGTGGGAGAGGAGAAGAGATTTGAATTGACGCTCAGTGGGGTTCTGCCCAAGAAAAGTATGGTCGATGGAACGTTGATTTGGTCAGATAAGAAGCATTTTGTTCGCAGCCCTATTGTCGTTTTCTCTAGCTAG 2274 54.09 MKISNSSIFFSFLFFTLLISPAIAAKKSYVVLLGSHSHGLEVSEVDLQKVVDSHHKLLGPFLASAKEVKDAIFYSYKKHINGFAAILDEEVAAELAKHPEVAAVLPNGRKELHTTHSWEFMKLEKNGVIPANSPWWKAKFGKDVIIANLDTGVWPESQSFGEQGIVGPVPKRWKGGCTDKTPDRVPCNRKLIGAKYFNEGYTAYLKSKNSTAALVAVINSTRDYEGHGSHTLSTAGGSYVHGANVFGMGQGTAKGGSPKARVAAYKVCWPLDKGGCFDADITEAFDHALHDGVDVISLSLGGTASDYSEDLIAISAFHAVKKGIPVVCSGGNSGPGAETVSNVAPWILTVAASTLDREFQATVQIGNGRRFQGSSLSKALSQKKQYHLITGAQAKAKNATTDDILVCMRGETARMDKGERASLAGAAGMILCNDEVSGFELIADLHVLPASHINYNDGQALLSYINSTKNPMGYLIPPSAKLHTKPAPTMAAFSSRGPNVITPEIIKPDVTAPGVNIIAAFTEGASPSGEPYDNRTVPFITMSGTSMSCPHVAGLVGLLRSIYPHWSPAALKSAIMTSARVRDDANRPMRDGGSPSLADATPFAFGSGHIRPLAAADPGLVYDLAPTDYLHFLCAAGYDNKSISVFSDAGFKCPDSASLLDFNYPNIAVRGLNGSVTVSRRLKNVGSPGTYRAYVRRPAGIRVSVRPRVLKFENVGEEKRFELTLSGVLPKKSMVDGTLIWSDKKHFVRSPIVVFSS 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27638466 27643554 + Sed0012678.1 Sed11g1173 729819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1173 757 FunFam Subtilisin-like protease SBT5.3 18 113 - -
Sed11g1173 757 Gene3D - 633 756 - -
Sed11g1173 757 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Sed11g1173 757 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Sed11g1173 757 PRINTS Subtilisin serine protease family (S8) signature 223 236 IPR015500 -
Sed11g1173 757 Gene3D - 356 483 - -
Sed11g1173 757 Pfam Subtilase family 141 585 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed11g1173 757 Pfam PA domain 397 461 IPR003137 -
Sed11g1173 757 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 113 IPR037045 -
Sed11g1173 757 SUPERFAMILY PA domain 400 468 IPR046450 -
Sed11g1173 757 CDD PA_subtilisin_like 362 475 - -
Sed11g1173 757 CDD Peptidases_S8_3 110 579 IPR034197 -
Sed11g1173 757 ProSiteProfiles Serine proteases, subtilase domain profile. 117 616 - -
Sed11g1173 757 SUPERFAMILY Subtilisin-like 112 620 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed11g1173 757 Gene3D Peptidase S8/S53 domain 143 629 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed11g1173 757 Pfam Fibronectin type-III domain 661 754 IPR041469 -
Sed11g1173 757 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 54 753 IPR045051 -
Sed11g1173 757 FunFam Subtilisin-like protease SBT1.5 143 372 - -
Sed11g1173 757 Pfam Peptidase inhibitor I9 28 113 IPR010259 -
Sed11g1173 757 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2878 Sed-Chr8:39924691 Sed11g1173 Sed-Chr11:27638466 1.00E-229 dispersed
Sed08g2884 Sed-Chr8:39952090 Sed11g1173 Sed-Chr11:27638466 5.70E-209 dispersed
Sed11g1173 Sed-Chr11:27638466 Sed12g1704 Sed-Chr12:28243348 2.30E-141 dispersed
Sed11g1173 Sed-Chr11:27638466 Sed03g1334 Sed-Chr3:8497376 2.50E-220 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1173 - - - 0.0