Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1188 ATGCCGAGATCTGATGTCGGAATAATTGGGAGCGGAGAATTGTTGGGTTTCGTTCGACAAGTCGTTTCGGGGCGGTGGTTTTCGCTCTTCGCTTCGTTTCTGATAATGTCCGGCGCCGGCGGAGTCTATTTGTTCGCTTATTACTCGAAGGAAATCAAAACGACGCTCAAATGCGACCAAACGACGCTCAATAGGATCGGCTTTTACAAAGACTTGGGAGCCAATATCGGCGTCGTTGCCGGCCTCCTCGCCGAGGTGGCCCCCACTTGGTTCGTTCTCCTCGTCGGCGCCGCCTTCAACTTCGCCGGATATTTCAAAATATGGCAGGCCGTCACCGGCAAAATTGTACGCCCCACCGTTGAGTTCTTTTGCTTCTTCATTTTGCTCGGAGCAAATTCCCAGAATTTTGCCAATACAGGAGTGCTAGTGACATGTGTGAAGAACTTCCCAGAAAGGAGAGGAGTGATGTTGGGCCTTTTAAAGGGCTTTGTGGGCCTAAGTGGAGCTATCATGACCCAACTTTATATTGCCATTTATGGTCATGACACCAAATCTGTGATTTTGCTTATTGCTTGGTTCCCTTCATTGATCTCTTTGATTTTCATTTACACAATCAGAGACATAAAAGTTATCAAACACCCAAACGAATTCAGAGTCTTTGTCCAATTTCTCTGCATCACTCTGATTTTAGCTCTTTTTCTCACTTCCATAATTTTCATTGAGAAAAGAGTCCAACTCGACCAATTTACACACGTTGCCATTGTAGCTTCAATCATGGCTTTGCTTTTACTCCCTCTATTGATTGCCATTCGCGAAGAAATTGTCATTTGGAATCTCGATAAAAGAACGGTTTCTAATCCGTTCACCCAGATTAGAATCGACAAACAAACCGACAGAATCTCAACTCCTTCTTCGTCCTCAGTATTACAACAACCAACAGAAAGTCAAAATTTCTTTGCAAACATTTTCAACAAACCCCCTAGAGGAGAAGACTACACAATTCTCCAAGCGATTTTCAGCATCGACATGATGATCATATGCACCACCATTATGCTTGGGTTCGGCGCTAGCTTGTCGGTCGTCGACAACCTCGGCCAAATCGGGGAATCCCTCGGCTACCCTCCCAAAACAATCAACTCCCTCGTCTCTATTGTTAGCATCTTTAACTTGATTGGAAGACTCTTTAGTGGATTCGTCTCGGAAATGTTACTCGAGAAGTTCAAATTCCCAAGGCCTTTAATGTTGACGCTCATCCTCTTGATTTCTTGCATTGGCCACCTCTTGGTGGCCTTCCCTTTCGAGAACTCGTTGTACATTGCATCCATCATTATCGGGTTCTCAATGGGGTCTCAAGTTCCGTTGCATTTTGCAATGATCTCGGAGATTTTTGGGCTGAAGCGTTACTCGACATTGTTCAATTTCGCACAGTTGTCTTGCCCGATCGGGTCTTATATTCTAAACGTGATGGTGATCGGGAAGTTGTATGACGAGATGGCGAAGGCGGGCGATCATGCAAACAATTTTCTTTGTGAAGGGAGGCATTGTTTTGAACTATCATTTACGATTCTAGCTGGGTTGACGTTTGTTGCGAGTATGATATCGTTGGTTTTGGTGAAGAGAACGAGTGAGTTTTATGGAGGAGATATATACAAGAAGTTTAGAGAAGATATGGATTCTTTGAAGACCGAAGTGCAACTTTATCAATTGGATGAAAAAAGGACTAAAATTGGAAATTTGCTTGTTGACAAACATAGCATCAATTTCAAGAGGTGA 1773 43.82 MPRSDVGIIGSGELLGFVRQVVSGRWFSLFASFLIMSGAGGVYLFAYYSKEIKTTLKCDQTTLNRIGFYKDLGANIGVVAGLLAEVAPTWFVLLVGAAFNFAGYFKIWQAVTGKIVRPTVEFFCFFILLGANSQNFANTGVLVTCVKNFPERRGVMLGLLKGFVGLSGAIMTQLYIAIYGHDTKSVILLIAWFPSLISLIFIYTIRDIKVIKHPNEFRVFVQFLCITLILALFLTSIIFIEKRVQLDQFTHVAIVASIMALLLLPLLIAIREEIVIWNLDKRTVSNPFTQIRIDKQTDRISTPSSSSVLQQPTESQNFFANIFNKPPRGEDYTILQAIFSIDMMIICTTIMLGFGASLSVVDNLGQIGESLGYPPKTINSLVSIVSIFNLIGRLFSGFVSEMLLEKFKFPRPLMLTLILLISCIGHLLVAFPFENSLYIASIIIGFSMGSQVPLHFAMISEIFGLKRYSTLFNFAQLSCPIGSYILNVMVIGKLYDEMAKAGDHANNFLCEGRHCFELSFTILAGLTFVASMISLVLVKRTSEFYGGDIYKKFREDMDSLKTEVQLYQLDEKRTKIGNLLVDKHSINFKR 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27731790 27734486 - Sed0010678.1 Sed11g1188 729834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1188 590 SUPERFAMILY MFS general substrate transporter 26 542 IPR036259 -
Sed11g1188 590 Gene3D MFS general substrate transporter like domains 338 546 IPR036259 -
Sed11g1188 590 CDD MFS_Mch1p_like 24 530 - -
Sed11g1188 590 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 24 554 - GO:0016020(PANTHER)
Sed11g1188 590 Pfam Nodulin-like 25 270 IPR010658 -
Sed11g1188 590 Coils Coil 550 570 - -
Sed11g1188 590 Pfam Major Facilitator Superfamily 347 541 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2239 Sed-Chr7:38326758 Sed11g1188 Sed-Chr11:27731790 4.80E-139 dispersed
Sed08g0190 Sed-Chr8:1047004 Sed11g1188 Sed-Chr11:27731790 8.80E-76 dispersed
Sed11g1188 Sed-Chr11:27731790 Sed13g2079 Sed-Chr13:25557416 7.70E-145 dispersed
Sed11g1188 Sed-Chr11:27731790 Sed06g2020 Sed-Chr6:44310356 1.50E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1188 - - - 0.0