Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1222 ATGGCGAATCGGCGACTCGACGGCACCGGCTTATTCAACTCTTCCCCATACTCAAATTTCCATGGAATTCACCACAACCCTTCTGCTGTTTTCATGAATCAAGAAGGGGCAGCTTTTGATTTTGGTGAGCTTGAAGAAGCCATAGTTTTGCAGGGAGTAAAGCTTGGAAATGATGAATCCAAATCGCCACATTTCAAGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGTTCAAAGTCAGAGAGCACAGATTCAGGATCAGCCAATATAAACAACACTTTTACAAGCAAAACAGAGCTAGAAATGGAACCTGAATCTCCAATTAGTGTAAAGGGCTGTTCTTCAGCTCAAGGTTTTGACCAAATTCAACCATTATTATTGCACCAAAATCAATCCTCTGCCAAAGAAAAGAGAAAAGGAGCTGGTTCAACATCAGAGAAGCAGCTTGATGCCAAGACACTGAGAAGATTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGTCGTTTGAGGAAGAAGGCTTATATTCAGCAGCTAGAATCCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATACAGCACGTTCTCAGGGGATGATTTTAGGAGCTTGTGGTGGCATTATGGGTAGCAATCTCAGCTCCGGAGCTGCAATATTTGACATGGAGTATGCACGGTGGCTCGACGAAGACCACCGTCTAATGGCGGAGCTGCGGGCGGCGGTGCAAGGGCATTTACCGGACGGCGATCTCCGAGCAATAGTAGACAGTTACATATGTCACTACGACGAAATATTTCACCTGAAAAGCGTGGCGGCGAAAGCGGACGTGTTTCATCTGATCACCGGAATGTGGATGACTCCGGCCGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCGAAGCTGATTGAGATGCTAATTCCACAATTAGAGACATTGACAGAGCAACAAGCAGTGGGAATTTGCAATTTGCAAAGATCTTCACATGAAACAGAGGATGCTCTGTTTCAGGGGCTGGAGCAGCTGCAGCATTCCCTCATATACATCATCGCCGGCACCGCCCTTGTCGACGGAATCAACCAGATGGCCGAGGCTGCCGGCAAGCTCTCCAACCTCGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACACTTCATCAATTGCGTCGAATATTGACAGTTCGACAGGCCGCACAATGTTTTATGGTCATTGGAGAGTACTATGGAAGGCTTCGAGCTCTTAGTTCTTTGTGGATTTCCCGACCAAGAGAGAACTACTTGAATGATGAAAATTCATGCCAAACATCAACTGAGCTGCAAATGATTCAGAGTTCCAATCCCCACTTTCCAAACTTTTGA 1404 46.65 MANRRLDGTGLFNSSPYSNFHGIHHNPSAVFMNQEGAAFDFGELEEAIVLQGVKLGNDESKSPHFKPAATLEMFPSWPIRFQQTPTLGSKSESTDSGSANINNTFTSKTELEMEPESPISVKGCSSAQGFDQIQPLLLHQNQSSAKEKRKGAGSTSEKQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHTARSQGMILGACGGIMGSNLSSGAAIFDMEYARWLDEDHRLMAELRAAVQGHLPDGDLRAIVDSYICHYDEIFHLKSVAAKADVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLETLTEQQAVGICNLQRSSHETEDALFQGLEQLQHSLIYIIAGTALVDGINQMAEAAGKLSNLEGFIRQADMLRQQTLHQLRRILTVRQAAQCFMVIGEYYGRLRALSSLWISRPRENYLNDENSCQTSTELQMIQSSNPHFPNF 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28039170 28045196 + Sed0026654.1 Sed11g1222 729868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1222 467 Coils Coil 182 209 - -
Sed11g1222 467 Gene3D - 162 213 - -
Sed11g1222 467 SMART brlzneu 159 226 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1222 467 ProSiteProfiles DOG1 domain profile. 228 436 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g1222 467 PANTHER TRANSCRIPTION FACTOR TGA9 99 440 - -
Sed11g1222 467 MobiDBLite consensus disorder prediction 143 165 - -
Sed11g1222 467 CDD bZIP_HBP1b-like 163 214 - -
Sed11g1222 467 Pfam bZIP transcription factor 162 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1222 467 SUPERFAMILY Leucine zipper domain 163 204 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1222 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1222 467 FunFam BZIP family transcription factor 162 211 - -
Sed11g1222 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g1222 467 MobiDBLite consensus disorder prediction 142 165 - -
Sed11g1222 467 Pfam Seed dormancy control 246 320 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3180 Sed-Chr1:57940769 Sed11g1222 Sed-Chr11:28039170 8.40E-129 dispersed
Sed11g1222 Sed-Chr11:28039170 Sed12g1269 Sed-Chr12:9165658 1.30E-94 dispersed
Sed11g1222 Sed-Chr11:28039170 Sed12g1268 Sed-Chr12:9165658 9.50E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39970 PF14144 DOG1 7.90E-31 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1222 K14431 - csv:101204604 750.74