Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1235 ATGGGGTCCTGCTTGTCTGCGGATAGCAGGAGCCCCATTCCTGGTTCCCCTACCTCCCCGGCCAAGTATCATCGAAGCCGGAGCAAGAGGCGTAATGGCTCTCGGAGTTCCTCGTTCGGGGATCCCGCGGTTCATCGCGTCCCCGGTCGGCTCTTCGGCAATGGCTTCTCTGATGTCGCCTCTCTGTTTACTCAGCAGGGAAAGAAAGGAACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGGTCTTCTGTGGGGTTTTTGATGGACACGGGCCGTACGGTCATATGGTCGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAAATTGAGTTCACATTGGGAGATCAACTTGAACACGGATGTCCTTAGAGACATCAGCCTCAATAATGGAAGTATGAACTCGGATGATGCTACCTCCTTTTTGTCTGCTGATGAAGAGTTTAAGGCATCCACTGATGTCGATGGAACGGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTCATGGACAGGGAGCTCAGAATGCATCAAACTATAGATAGTTTCTGTAGTGGGACTACAGCAGTGACTATGGTTAAACAGGGTCAGGATCTTGTCATAGGTAACGTTGGGGACTCCCGAGCTGTTCTGGGCACGAGAGATAAGAATGACTCTCTTGTTGCAATTCAATTGACTGTGGATCTCAAGCCTAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAGAGGTCGTGTCTTTGCTCTCCAAGACGAACCTGATGTTCATCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCGCGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTGATCTCTGTACCTGAAATATCCTATCGACGGCTCACTGAAAGAGACGAATTCATCGTTCTGGCTACAGATGGAGTATGGGATGTGCTGTCAAACAAAGAGGTGGTACATGTCATTGCATCAGCTCCAAAACGAACTACTGCAGCTCGAACTCTTGTCGAGGCAGCTGTTAAAGCATGGAAATACAAATACCCAACTTCTAAGATTGATGACTGTGCAGTCGTGTGCCTCTTTCTCGACTCAAACTCCATTAGTCCATCATCTGCTTCCAGTACCAAACTGGAGGAGCAAAAAAGTTTAATCGATCATGTCAGCAGTGCAGTTGAGAATGAAGGTCTCCCTGGCCCAAATGGCCTGAATCGTTCGGGAACCGTCCGAACCAGCAAGGAAATTTTGCAGGATGGAAGCGAAGAAGAAGATGAATCGAAAGAGGAAGAACATTCTGAAATAGGAATAGAATGGTCTGCCCTGGAAGGAGTCTCACGCGTAAACACTTTGGTAAACCTGCCGAGATTTGATCCCGGAAAAGAAGATAAGTAA 1434 47.35 MGSCLSADSRSPIPGSPTSPAKYHRSRSKRRNGSRSSSFGDPAVHRVPGRLFGNGFSDVASLFTQQGKKGTNQDAMIVWENFGSRTDTVFCGVFDGHGPYGHMVAKKVRDSLPLKLSSHWEINLNTDVLRDISLNNGSMNSDDATSFLSADEEFKASTDVDGTEKQPEIFHTLKESFLKAFRVMDRELRMHQTIDSFCSGTTAVTMVKQGQDLVIGNVGDSRAVLGTRDKNDSLVAIQLTVDLKPNLPAEAERIRKCRGRVFALQDEPDVHRVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTERDEFIVLATDGVWDVLSNKEVVHVIASAPKRTTAARTLVEAAVKAWKYKYPTSKIDDCAVVCLFLDSNSISPSSASSTKLEEQKSLIDHVSSAVENEGLPGPNGLNRSGTVRTSKEILQDGSEEEDESKEEEHSEIGIEWSALEGVSRVNTLVNLPRFDPGKEDK 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28150901 28154669 - Sed0021090.1 Sed11g1235 729881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1235 477 CDD PP2Cc 59 377 IPR001932 -
Sed11g1235 477 SMART PP2C_4 47 375 IPR001932 -
Sed11g1235 477 SUPERFAMILY PP2C-like 56 378 IPR036457 -
Sed11g1235 477 Gene3D - 58 379 IPR036457 -
Sed11g1235 477 MobiDBLite consensus disorder prediction 1 16 - -
Sed11g1235 477 FunFam probable protein phosphatase 2C 33 54 380 - -
Sed11g1235 477 ProSiteProfiles PPM-type phosphatase domain profile. 59 377 IPR001932 -
Sed11g1235 477 MobiDBLite consensus disorder prediction 1 44 - -
Sed11g1235 477 PANTHER PROTEIN PHOSPHATASE 38 376 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed11g1235 477 MobiDBLite consensus disorder prediction 405 449 - -
Sed11g1235 477 Pfam Protein phosphatase 2C 173 356 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1773 Sed-Chr4:32365050 Sed11g1235 Sed-Chr11:28150901 5.50E-87 dispersed
Sed05g3131 Sed-Chr5:41400091 Sed11g1235 Sed-Chr11:28150901 1.00E-115 dispersed
Sed05g3132 Sed-Chr5:41400091 Sed11g1235 Sed-Chr11:28150901 1.90E-112 dispersed
Sed08g1204 Sed-Chr8:24901493 Sed11g1235 Sed-Chr11:28150901 2.00E-133 dispersed
Sed08g2852 Sed-Chr8:39723223 Sed11g1235 Sed-Chr11:28150901 1.20E-133 dispersed
Sed09g0433 Sed-Chr9:4325431 Sed11g1235 Sed-Chr11:28150901 6.20E-130 dispersed
Sed09g0434 Sed-Chr9:4325431 Sed11g1235 Sed-Chr11:28150901 1.10E-129 dispersed
Sed11g0391 Sed-Chr11:3739441 Sed11g1235 Sed-Chr11:28150901 2.30E-94 dispersed
Sed11g1235 Sed-Chr11:28150901 Sed14g0603 Sed-Chr14:6105030 1.30E-86 dispersed
Sed11g1235 Sed-Chr11:28150901 Sed09g0429 Sed-Chr9:4325155 5.30E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1235 - - - 0.0