Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1242 ATGAGCTCGAAGGAGAAACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTACGACACCGCTGGACCCTGCGTCTTTTTCTGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGTGATTTGGAACTTGTTGCGAGGAACTTTGAGTCTTCTGAACTCGACTTCTCTAGATACGGGGACACATTCTTTGAGGTAATTTTCACTGGTGGACGCACGCAGCCTGGAACAACCAAACCTGAAGAAGGAGAGCGCCATCCACACTCTATATTAGACTGTGAACCTAAACGTGAAGCCATTCTACCATCTGTTATCTACATACAGAAAATTTTGAGGCGTCGGCCATTTCTCATCAAGTATCTAGAAAATGTCATGCGAAGGTTTCTGCAGTCCCTCGAGTTCTTTGAAGAAAATGAAAGGAAGAAACTTGCAATTTTCACAGCCCTTGCCTTCTCCCAGAAGTTGTCGGGCCTTCCTCCAGAGACCGTTTTTCAGCCATTGCTTAAGGATAATCTTGTGGCCAAAGGGCTAGTTCTTTCATTTATAACTGACTTTTTCAAAGAATATCTTATGGATAACAGCCTTGATGATCTGATTTCCATCCTGAAGAGGGGCAAAGTGGAAGACAGTCTCCTGGAGTTCCTTCCCTCTGCCAAGCGATCTGCTGAAGGCTTTTCTGAGCATTTCACCAAGGAAGGGCTGGTACCCTTGGTTGAATACAACGCGAAGAAAATGTTTGATGTGAAGCTAAGTGAAATGAAATCTTCTTTAACAACTCAAATAGCTGAGGAAACTGACATTGCTGAAGTCATAGAAACTGTGAAGCATCGAATGAGAGATGCCAATTTACCTGATATCGAGGTTGTTCGAATTTTGTGGGATGTGATAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAACAACAGAATGCTAATTCAGCTCTTCGTCAGGTGAAAACATGGGCAGAATTGTTGAATACCTTCTGTAGCACAGGGAAACTTGAGCTGGAACTTATTTACAAAGTTCAAATGCAATGTTATGAGGATGCTAAGCTGATGAAGCTTTTCCCCGACATTGTAAAGTCGCTGTATGACCAGGATGTGCTGGCTGAGGATACCATACTCTTTTGGTTCCGTAAAGGAACAAACCCTAAGGGCAGGCAGAGCTTTGTGAAGGCACTGGAACCATTTGTGAATTGGCTGGAAGAGGCAGAGGAAGAGGAATGA 1236 44.01 MSSKEKPTLGGTRIKTRKRNITTPLDPASFSDAVVQIYLDNAGDLELVARNFESSELDFSRYGDTFFEVIFTGGRTQPGTTKPEEGERHPHSILDCEPKREAILPSVIYIQKILRRRPFLIKYLENVMRRFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLMDNSLDDLISILKRGKVEDSLLEFLPSAKRSAEGFSEHFTKEGLVPLVEYNAKKMFDVKLSEMKSSLTTQIAEETDIAEVIETVKHRMRDANLPDIEVVRILWDVIMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCSTGKLELELIYKVQMQCYEDAKLMKLFPDIVKSLYDQDVLAEDTILFWFRKGTNPKGRQSFVKALEPFVNWLEEAEEEE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28214091 28220661 + Sed0016020.1 Sed11g1242 729888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1242 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515(InterPro)
Sed11g1242 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515(InterPro)
Sed11g1242 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 411 IPR051245 GO:0005737(PANTHER)|GO:0016020(PANTHER)
Sed11g1242 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Sed11g1242 411 SMART 542_3 325 410 IPR003307 GO:0005515(InterPro)
Sed11g1242 411 Gene3D - 244 411 - -
Sed11g1242 411 FunFam ARM repeat superfamily protein 243 411 - -
Sed11g1242 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1242 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g336 . . . . . . . . . . . . . . Sed11g1242 . Cpe07g00119 Bhi04g00709 Tan02g2360 Cmetu03g0768 . . . . Cla08g01089 Cam08g1541 Cec08g1115 Cco08g1242 Clacu08g1244 . Cre08g1025 Cone4ag1366 Cone7ag1565 . . . . . Cme03g01501 . . . . . . . . . . . Cma12g00141 . . . . . . . . . . . . . . . . . . . Lsi08g00945 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004317 1 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 1 1 1 43