Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1294 ATGGAACATAGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGCCGGCGCGATAAGCTAAGAGTTCCTCAGCCGAATCATATGCGACCCGCAAACAACCCTGATGATCATGAACAATTGAGTTTTCAAAACTCTGGCCTTGATTTGGATCTTGTTAGAATTCAAAGTCTCAACAATATTGCAATTTTGCCTCATGATTTGGCTTTGTTGCAACCAGAAGTGATCAGTAACAATGGGGGTTATTATTGGAAAAACTGTGAACAACAACAACAACAAGGCTGTGATTGGGTGGTGAACTGTGGGAGTAATTCTTTTTTGGGAGGTGGAATGTTGAATGATTCTTCTACTGTGTATTCACTCAAGCCAAATTGCATTGGATTCCAAACTTCAACCTCCACATTTAATCAGGATGGTCCAACAATTTACCAAAATACCCTTCAGGGTGTTGTTACATCATCCTCCATTGGAACTCAGGACATGGAAATGGCATCCATTATGCAGCATAATTTCACTGAAATTAACCAAACTGATGCTAGTGAAGGCAGTAGAAATGAGCTTGCTCTTCTTCCGGTGTACCGGGATCCGCCGAATGTGTTGCCTTATGACAGTACTGGTGCTTGGACTGATAGAACATTCTATAACCAATTGAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCTCTGTCTCTTTCTTCGAATCCACCGTCTAAGTTGCCTACCGCACAGCTCGAAGAATCAGAGAAATTACAGGAAAGCATGACCGTGTCGAAACATACTCATGAATCCAAAGCAGTTAAGTCCGAGAGTGTGTGTAGATTACCGAAGGCTACATCGATTGGTAATAAAAGCTATGGGAAATCTCTACAAGAGGTAATGGTGGCTCCTGTGAACACATTTAGAAATCCAGGTCCTCTTGGTCCCTTTACGGGTTACGCAACGATTTTGAAGAGTTCGAAATTCTTGAAGCCAGCGCAGCTACTGTTGGACGAGTTTTGTGGCTCAAATGGACAGAAATTTGTCCAACCAAGTGAGGTATTTGAGAAGACATCTGGGGACCTTGGTGCCTCAATGGCTCTTACTGCATTTAGAAATGAGGTTGAGGGCGTTGTTAACGACAGTCGTTCACGTGCTGTAACCTCTACGTTCTGCGGTTCGAATGAAACAAATGTTAGTGGAGTCGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCCAAACTTCTATATATGCTAGAAGAGGTTTGCCGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTTGAAACAGTAGCTGGTCTTAGTTCTGCCACACCTTATATTTCCCTGGCACTCAAGACAGTCTCGAGACACTTCCGGTGTCTAAAGAACGCCATTTCAGATCAATTAAAGTATCTTAGAAAGGTATTAGGTGAGGATTTGTCTGCTGGGACAAGCGGTAGCAAAGGCGATGCGAATTTGGCTCGGTTGAAATCCTTGGAACAGAGCTTCCAAAAGCAAAAATCTGGTATTAATGTCAATATGGGAATCCTTGAATCCCAAAACGTGTGGAGGCCGCAGAGAGGCTTGCCAGAGCGCGCCGTGGCAATTCTTAGAGCCTGGCTCTTCGAGCATTTTCTTCACCCGTACCCCACAGACACAGATAAACACATGTTAGCCACTCAAACAGGCCTCTCTCGTAATCAGGTGTCAAATTGGTTCATAAATGCTCGAGTGCGAGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTGGAAACCAAGGGCATGGCAGAAACAAACAACAAAAGCCATGGTGCGAAAGATGGGAGTTCGACAATCGAAAATGCAGCCGGTTGGACCAGTAGAGAACAACAACCTCTTAAAAACCATAGAGCTGTAAATGAAATTGCAAGTCATCATATGCAGTGCTTGGGCGGGGATTCCTCAAGTGGCGAAAGAAATAGACTAGGCCGGAGCGACGAACCGTGGGATCAAGGCAAACAACCCAAATTGGACCACGCGATTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCGGGCCAGCGCGGTTGAGGTTGGAGGGCTTGGATCTGTCTCTCTAACATTAGGCCTCCGCCACCGAGTCGAGAGTGCCCACCATCAACAGCAGCGACACCAGTTGCAGCAACAAGACGACCAACTAATACGCCACTATGGAGGTGAATTGATCCATGATTTTGTTGGGTAA 2253 44.78 MEHSYGFEQHVAQQSRRDKLRVPQPNHMRPANNPDDHEQLSFQNSGLDLDLVRIQSLNNIAILPHDLALLQPEVISNNGGYYWKNCEQQQQQGCDWVVNCGSNSFLGGGMLNDSSTVYSLKPNCIGFQTSTSTFNQDGPTIYQNTLQGVVTSSSIGTQDMEMASIMQHNFTEINQTDASEGSRNELALLPVYRDPPNVLPYDSTGAWTDRTFYNQLRTFMSDSNPQGLSLSLSSNPPSKLPTAQLEESEKLQESMTVSKHTHESKAVKSESVCRLPKATSIGNKSYGKSLQEVMVAPVNTFRNPGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGQKFVQPSEVFEKTSGDLGASMALTAFRNEVEGVVNDSRSRAVTSTFCGSNETNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFETVAGLSSATPYISLALKTVSRHFRCLKNAISDQLKYLRKVLGEDLSAGTSGSKGDANLARLKSLEQSFQKQKSGINVNMGILESQNVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAETNNKSHGAKDGSSTIENAAGWTSREQQPLKNHRAVNEIASHHMQCLGGDSSSGERNRLGRSDEPWDQGKQPKLDHAIQSNMEGELMGFMPYRASAVEVGGLGSVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGGELIHDFVG 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28669622 28675390 - Sed0006566.1 Sed11g1294 729940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1294 750 Pfam Associated with HOX 316 471 IPR006563 -
Sed11g1294 750 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 237 617 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed11g1294 750 FunFam BEL1-like homeodomain protein 9 531 593 - -
Sed11g1294 750 SMART prehox3 311 472 IPR006563 -
Sed11g1294 750 MobiDBLite consensus disorder prediction 1 41 - -
Sed11g1294 750 SMART HOX_1 528 592 IPR001356 GO:0003677(InterPro)
Sed11g1294 750 Pfam Homeobox KN domain 545 584 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed11g1294 750 MobiDBLite consensus disorder prediction 1 24 - -
Sed11g1294 750 SUPERFAMILY Homeodomain-like 530 594 IPR009057 -
Sed11g1294 750 CDD homeodomain 528 589 IPR001356 GO:0003677(InterPro)
Sed11g1294 750 MobiDBLite consensus disorder prediction 648 674 - -
Sed11g1294 750 MobiDBLite consensus disorder prediction 224 249 - -
Sed11g1294 750 ProSiteProfiles 'Homeobox' domain profile. 525 588 IPR001356 GO:0003677(InterPro)
Sed11g1294 750 MobiDBLite consensus disorder prediction 658 673 - -
Sed11g1294 750 Gene3D - 531 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2320 Sed-Chr3:18239033 Sed11g1294 Sed-Chr11:28669622 6.70E-59 dispersed
Sed08g1763 Sed-Chr8:32482543 Sed11g1294 Sed-Chr11:28669622 7.30E-32 dispersed
Sed11g1294 Sed-Chr11:28669622 Sed12g1342 Sed-Chr12:10289584 2.50E-63 dispersed
Sed11g1294 Sed-Chr11:28669622 Sed11g1295 Sed-Chr11:28669622 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39972 PF07526 POX 5.80E-43 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1294 - - - 0.0