Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1294 | ATGGAACATAGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGCCGGCGCGATAAGCTAAGAGTTCCTCAGCCGAATCATATGCGACCCGCAAACAACCCTGATGATCATGAACAATTGAGTTTTCAAAACTCTGGCCTTGATTTGGATCTTGTTAGAATTCAAAGTCTCAACAATATTGCAATTTTGCCTCATGATTTGGCTTTGTTGCAACCAGAAGTGATCAGTAACAATGGGGGTTATTATTGGAAAAACTGTGAACAACAACAACAACAAGGCTGTGATTGGGTGGTGAACTGTGGGAGTAATTCTTTTTTGGGAGGTGGAATGTTGAATGATTCTTCTACTGTGTATTCACTCAAGCCAAATTGCATTGGATTCCAAACTTCAACCTCCACATTTAATCAGGATGGTCCAACAATTTACCAAAATACCCTTCAGGGTGTTGTTACATCATCCTCCATTGGAACTCAGGACATGGAAATGGCATCCATTATGCAGCATAATTTCACTGAAATTAACCAAACTGATGCTAGTGAAGGCAGTAGAAATGAGCTTGCTCTTCTTCCGGTGTACCGGGATCCGCCGAATGTGTTGCCTTATGACAGTACTGGTGCTTGGACTGATAGAACATTCTATAACCAATTGAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCTCTGTCTCTTTCTTCGAATCCACCGTCTAAGTTGCCTACCGCACAGCTCGAAGAATCAGAGAAATTACAGGAAAGCATGACCGTGTCGAAACATACTCATGAATCCAAAGCAGTTAAGTCCGAGAGTGTGTGTAGATTACCGAAGGCTACATCGATTGGTAATAAAAGCTATGGGAAATCTCTACAAGAGGTAATGGTGGCTCCTGTGAACACATTTAGAAATCCAGGTCCTCTTGGTCCCTTTACGGGTTACGCAACGATTTTGAAGAGTTCGAAATTCTTGAAGCCAGCGCAGCTACTGTTGGACGAGTTTTGTGGCTCAAATGGACAGAAATTTGTCCAACCAAGTGAGGTATTTGAGAAGACATCTGGGGACCTTGGTGCCTCAATGGCTCTTACTGCATTTAGAAATGAGGTTGAGGGCGTTGTTAACGACAGTCGTTCACGTGCTGTAACCTCTACGTTCTGCGGTTCGAATGAAACAAATGTTAGTGGAGTCGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCCAAACTTCTATATATGCTAGAAGAGGTTTGCCGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTTGAAACAGTAGCTGGTCTTAGTTCTGCCACACCTTATATTTCCCTGGCACTCAAGACAGTCTCGAGACACTTCCGGTGTCTAAAGAACGCCATTTCAGATCAATTAAAGTATCTTAGAAAGGTATTAGGTGAGGATTTGTCTGCTGGGACAAGCGGTAGCAAAGGCGATGCGAATTTGGCTCGGTTGAAATCCTTGGAACAGAGCTTCCAAAAGCAAAAATCTGGTATTAATGTCAATATGGGAATCCTTGAATCCCAAAACGTGTGGAGGCCGCAGAGAGGCTTGCCAGAGCGCGCCGTGGCAATTCTTAGAGCCTGGCTCTTCGAGCATTTTCTTCACCCGTACCCCACAGACACAGATAAACACATGTTAGCCACTCAAACAGGCCTCTCTCGTAATCAGGTGTCAAATTGGTTCATAAATGCTCGAGTGCGAGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTGGAAACCAAGGGCATGGCAGAAACAAACAACAAAAGCCATGGTGCGAAAGATGGGAGTTCGACAATCGAAAATGCAGCCGGTTGGACCAGTAGAGAACAACAACCTCTTAAAAACCATAGAGCTGTAAATGAAATTGCAAGTCATCATATGCAGTGCTTGGGCGGGGATTCCTCAAGTGGCGAAAGAAATAGACTAGGCCGGAGCGACGAACCGTGGGATCAAGGCAAACAACCCAAATTGGACCACGCGATTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCGGGCCAGCGCGGTTGAGGTTGGAGGGCTTGGATCTGTCTCTCTAACATTAGGCCTCCGCCACCGAGTCGAGAGTGCCCACCATCAACAGCAGCGACACCAGTTGCAGCAACAAGACGACCAACTAATACGCCACTATGGAGGTGAATTGATCCATGATTTTGTTGGGTAA | 2253 | 44.78 | MEHSYGFEQHVAQQSRRDKLRVPQPNHMRPANNPDDHEQLSFQNSGLDLDLVRIQSLNNIAILPHDLALLQPEVISNNGGYYWKNCEQQQQQGCDWVVNCGSNSFLGGGMLNDSSTVYSLKPNCIGFQTSTSTFNQDGPTIYQNTLQGVVTSSSIGTQDMEMASIMQHNFTEINQTDASEGSRNELALLPVYRDPPNVLPYDSTGAWTDRTFYNQLRTFMSDSNPQGLSLSLSSNPPSKLPTAQLEESEKLQESMTVSKHTHESKAVKSESVCRLPKATSIGNKSYGKSLQEVMVAPVNTFRNPGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGQKFVQPSEVFEKTSGDLGASMALTAFRNEVEGVVNDSRSRAVTSTFCGSNETNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFETVAGLSSATPYISLALKTVSRHFRCLKNAISDQLKYLRKVLGEDLSAGTSGSKGDANLARLKSLEQSFQKQKSGINVNMGILESQNVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAETNNKSHGAKDGSSTIENAAGWTSREQQPLKNHRAVNEIASHHMQCLGGDSSSGERNRLGRSDEPWDQGKQPKLDHAIQSNMEGELMGFMPYRASAVEVGGLGSVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGGELIHDFVG | 750 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28669622 | 28675390 | - | Sed0006566.1 | Sed11g1294 | 729940 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1294 | 750 | Pfam | Associated with HOX | 316 | 471 | IPR006563 | - | |
Sed11g1294 | 750 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 237 | 617 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed11g1294 | 750 | FunFam | BEL1-like homeodomain protein 9 | 531 | 593 | - | - | |
Sed11g1294 | 750 | SMART | prehox3 | 311 | 472 | IPR006563 | - | |
Sed11g1294 | 750 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Sed11g1294 | 750 | SMART | HOX_1 | 528 | 592 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1294 | 750 | Pfam | Homeobox KN domain | 545 | 584 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed11g1294 | 750 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Sed11g1294 | 750 | SUPERFAMILY | Homeodomain-like | 530 | 594 | IPR009057 | - | |
Sed11g1294 | 750 | CDD | homeodomain | 528 | 589 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1294 | 750 | MobiDBLite | consensus disorder prediction | 648 | 674 | - | - | |
Sed11g1294 | 750 | MobiDBLite | consensus disorder prediction | 224 | 249 | - | - | |
Sed11g1294 | 750 | ProSiteProfiles | 'Homeobox' domain profile. | 525 | 588 | IPR001356 | GO:0003677(InterPro) | |
Sed11g1294 | 750 | MobiDBLite | consensus disorder prediction | 658 | 673 | - | - | |
Sed11g1294 | 750 | Gene3D | - | 531 | 593 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2320 | Sed-Chr3:18239033 | Sed11g1294 | Sed-Chr11:28669622 | 6.70E-59 | dispersed | |
Sed08g1763 | Sed-Chr8:32482543 | Sed11g1294 | Sed-Chr11:28669622 | 7.30E-32 | dispersed | |
Sed11g1294 | Sed-Chr11:28669622 | Sed12g1342 | Sed-Chr12:10289584 | 2.50E-63 | dispersed | |
Sed11g1294 | Sed-Chr11:28669622 | Sed11g1295 | Sed-Chr11:28669622 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39972 | PF07526 | POX | 5.80E-43 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1294 | - | - | - | 0.0 |